Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maccullochella_20peelii_20[genbank_20GCA_5F002120245.1_202017-05-09] 18,198 sequences; 633,241,041 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq3162 111 1e-19 seq6074 87.8 2e-12 >seq3162 Length=48913 Score = 111 bits (122), Expect = 1e-19 Identities = 145/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || |||||||| || |||||||| ||| | || || |||||| || || || ||| Sbjct 2784 GTGGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCA 2725 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| |||||||| ||||| ||||| |||||||| || || ||||| || Sbjct 2724 GCAAAGATCAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTATCCTGGATCTTGGCCTTC 2665 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||||| ||| || || |||| ||| | || ||||| ||||| || Sbjct 2664 ACATTCTCAATAGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTC 2605 Query 114366 TTTACAAAAATCTGCATGGCT 114386 || ||||||||||||||| || Sbjct 2604 TTCACAAAAATCTGCATGCCT 2584 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| ||| | || || |||||| || || || ||| Sbjct 2556 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCA 2497 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| |||||||| ||||| ||||| ||||| || || || ||||| ||| Sbjct 2496 GCAAAGATCAGACGCTGCTGGTCTGGAGGGATGCCCTCCTTATCCTGGATCTTGGCTTTG 2437 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | ||||| |||||| ||| || || |||| || | || ||||| ||||| || Sbjct 2436 ACATTTTCAATGGTGTCACTGGGCTCAACCTCCAAAGTGATGGTCTTGCCAGTCAGGGTC 2377 Query 114366 TTTACAAAAATCTGCAT 114382 || |||||||||||||| Sbjct 2376 TTCACAAAAATCTGCAT 2360 >seq6074 Length=24291 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| || | || || |||||| || || || ||| Sbjct 4596 GTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCA 4655 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||| ||||| || ||||||||||| ||||| || || || Sbjct 4656 GCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATTTTAGCCTTG 4715 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| ||| ||||| |||| ||| | || ||||| || || || Sbjct 4716 ACATTCTCAATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTC 4775 Query 114366 TTTACAAAAATCTGCATG 114383 || ||||| ||||||||| Sbjct 4776 TTGACAAAGATCTGCATG 4793 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| || | || || |||||| || ||||| || Sbjct 4824 GTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGTTTGCCG 4883 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||| ||||| || ||||||||||| ||||| || || || Sbjct 4884 GCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATTTTAGCCTTG 4943 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||||||| ||| || || |||| ||| | || ||||| || || || Sbjct 4944 ACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTC 5003 Query 114366 TTTACAAAAATCTGCATG 114383 || ||||| ||||||||| Sbjct 5004 TTGACAAAGATCTGCATG 5021 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| || | || || |||||| || || || ||| Sbjct 3761 GTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCA 3820 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||| ||||| || ||||||||||| ||||| || || || Sbjct 3821 GCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATTTTAGCCTTG 3880 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||||||| ||| ||||| |||| ||| | || || || || || || Sbjct 3881 ACATTCTCAATGGTGTCGCTGGGCTCGACCTCCAGGGTGATGGTCTTACCAGTGAGGGTC 3940 Query 114366 TTTACAAAAATCTGCATG 114383 || || || ||||||||| Sbjct 3941 TTGACGAAGATCTGCATG 3958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420041219179176