Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maccullochella_20peelii_20[genbank_20GCA_5F002120245.1_202017-05-09] 18,198 sequences; 633,241,041 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq4239 443 4e-119 seq7404 123 5e-23 seq1161 109 1e-18 seq49 96.9 7e-15 >seq4239 Length=33969 Score = 443 bits (490), Expect = 4e-119 Identities = 1077/1611 (67%), Gaps = 78/1611 (5%) Strand=Plus/Plus Query 244010 GAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCACAGGCCCAAGCGCTCC 244069 || || || || |||| |||||| | ||| | ||| ||||||| ||| | |||| Sbjct 29840 GACCCGTTATGAGCGATCAGCTGGTTCTTCATCTCCTCGCTCCACAGCCCC---CTCTCC 29896 Query 244070 ---AGCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGC 244126 || | | || ||| || ||||| | |||||||||||| || || || | ||| Sbjct 29897 GTCAGGTCTTTGAGCAGATGTGGATTCACGATCTGAAACTCTCCAGAGAGGACCCTGCGG 29956 Query 244127 TGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTG 244186 ||||| ||||||| || | || || ||| |||||||||| ||||| || ||| Sbjct 29957 GTGTAGATGTTGCTGGTGTAAGCTTCAATAGACTCATTGTTGCCCAGGATCTGGGCGGTG 30016 Query 244187 CTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGG 244246 || || ||||| || | || ||||||||||||||||||||||||| | || Sbjct 30017 GAGGCTGTGGGCATCGGGGCCAGCAGCAGACTGTTCCTCACGCCGTGCTTGGCAATCTTC 30076 Query 244247 AGTCTGAGCTCGTTCCAGTCCCACATGCCCGAGAG-GTCCTCGCGTTTGAGGCCCCACAT 244305 | ||| ||||||||| || | | | | | ||| || | |||||| Sbjct 30077 TCCTTCAGCAGCTTCCAGTCCAGCAGGTCGGTGGGTGTCTTCTC----------CCACAT 30126 Query 244306 GTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTC 244365 ||| |||| || | || ||||||||||| ||| ||||| ||| ||||| || Sbjct 30127 GTCGTACTGGAGGATGCCGTTGCTGACGGGAGAGCCTTCGTACGTCTCATAGGGGCCAA- 30185 Query 244366 GCGCTGG-GCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCA 244424 || | | ||||||| ||||| | || ||||||||||||||||||||||| |||||| Sbjct 30186 GCTCAGCCGCCAGCTCGCAGCTTGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATCT 30245 Query 244425 TCTTGTTCATGTCGCGG-GCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACG 244483 |||||| | || | |||| | || ||| ||| | ||| | |||||| | Sbjct 30246 GAATGTTCA-GCAGCTGAGCCTCGGGGCTTTCGAACGGGTAACGCATGAGGATGAAGGCA 30304 Query 244484 TCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCT 244543 ||||||| ||||| || ||||| || || || ||||| ||||||||||| ||| Sbjct 30305 TCGGCCAAACCCTGGACACCGATTCCTATTGGCCTGTGACGCTTGTTGGACTTTTCTGCT 30364 Query 244544 TCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCA-TGCG 244602 || ||||| || || ||||| || || | |||||| | ||| | || | | | Sbjct 30365 TCAGGCACTGGATAGAAGTTAATCTCAATTATCTTGTTTAAGTTTTTGACTATTACTTTG 30424 Query 244603 GACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCT 244662 | | || | || || || |||||| | | | ||| | | || Sbjct 30425 GTC-ACATACGCTAGTTTCTTAAAGTCAAAA------GTCTGCTCAGGGGTG-------- 30469 Query 244663 CACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGT 244722 || || |||||| || | | |||||| || ||||| |||||||| || | |||| Sbjct 30470 -ACGTACATGTTGAGTGCAATGGAGGCCAGATTACAGACAGCCACCTCATCGTGGCTGGT 30528 Query 244723 GTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATT 244782 ||| | | || || ||||||||||| |||| |||||||||||| || | ||| || || Sbjct 30529 GTATTCAATGATTTCTGTGCAGAGGTTGCTGCTCTTGATGGTGCCTAGATTCTGCTGGTT 30588 Query 244783 GGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGC 244842 | ||| |||||| ||||||||||| |||||| | ||| ||||| || ||||| Sbjct 30589 GCTCTTCCTGTTGCACGCGTCCTTGTACAGCATGTATGGCGTACCGGTTTCTGTCTGGGA 30648 Query 244843 GACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAG-CCTTGCCCTCTG 244901 ||| | | || ||| || | | |||||| ||| | || | || | ||||| Sbjct 30649 CTCGATAATGGCGTGCCACAGCTGCTGAGCCTTCACCAAGC-GCTTGACCCTCCCCTCCT 30707 Query 244902 CCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGC 244961 ||| || ||| || || ||| ||||| |||||| |||||| || || |||| Sbjct 30708 TCTCATATGTGGTATAGAGCTTCTCAAACTCCTCCCCCCAGCACTCGTCCAGCCCCGGGC 30767 Query 244962 ACGACGCCGGGCACATGAGACTCCACTC---GCCGCCGTCCTTGACCCTCTGCATGAAGA 245018 || || ||||| ||| ||| || | || ||| || |||| |||||| | Sbjct 30768 ACTCACTTGGACACATCAGAGACCAGTCTTGGTTGCTTTCC---ACTCTCTTCATGAACA 30824 Query 245019 GGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGT 245078 ||||||||||||| | ||| | ||| || || |||| |||||||| ||| || |||| Sbjct 30825 GGTCGGGGATCCACATGGCGTAGAAAAGATCTCTGGCTCTCTGCTCCTCCTTTCCTGTGT 30884 Query 245079 TCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGA 245138 ||||| ||||||||| |||||||| || || | |||||||||||||| ||| | || | Sbjct 30885 TCTTCTTCAGCTCCAGGAAGTCAAACACATCAAAGTGCCAGGGCTCCAGGTACATGGCAA 30944 Query 245139 GGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGC-GCGTTG---AAG 245194 ||| ||||||| ||||||||| |||||||| | | | || || | |||| | Sbjct 30945 AGGCTCCGGGCCTCTTGTTGCCACCCTGGTCGA----CATAACGTGCTGTGTTGTTATAA 31000 Query 245195 ATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCC 245254 | | ||| | || |||| || || |||| |||||| ||||| ||||||| ||| Sbjct 31001 ACTCTCAGCATGGGGACTAGCCCATTGGAGTTGCCGTTTGTGCCAGCGATGTAGCTCCCC 31060 Query 245255 TTGCCCCTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCG 245314 | |||| | ||||| | || ||| | ||| || || ||||||||||||||| Sbjct 31061 GTTGATCTGATGCAGCTGACCGCCACGCCGATTCCTCCAGCTGCCTTGGAGATGAGGGCA 31120 Query 245315 CAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAG 245374 || ||| | ||||| ||||| || |||||||| |||||| |||||| ||| Sbjct 31121 CATTGCTTCAGCGTGTCATAAATGCCTTCGATGCTGTCGTCTTTCATGGCGAGCAGGAAG 31180 Query 245375 CAGGAGGACAGCTGGGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTA 245434 ||| ||||||||| ||| || | | | | |||||| || || ||| ||||||||| Sbjct 31181 CAGCTGGACAGCTGTGGCCTGTTGGTTCCTGCGTTGAAGAGCGTAGGGGAGGCGTGGGTG 31240 Query 245435 AAGTAGCGGCTC-GAGAGGAACCCGTACGTCTGGAGCAGAGCGTCGAT----GTTGTCGC 245489 || | | ||| || | | ||| |||| || |||||||| ||| | Sbjct 31241 AACCA-CTTCTCTGACAACAGGTTGTAGGTCTCGATGGCTGCGTCGATATCCGTTTT--- 31296 Query 245490 CGTGGATCTGCAGGGCGCAC-CTCATGAGGGTGTGCTGGGGCGTCTCGATGGGTCCCTCG 245548 ||||||| | || ||| |||||||| ||||||| ||| || | || | || Sbjct 31297 -GTGGATCCCAACAGC-CACTCTCATGAGCATGTGCTGCGGC----CGCTCGGCCACTTT 31350 Query 245549 GGTCC------CTTGAGCATGTAGGAGCGCTCGAGCGTCTTGAACCCAAAG 245593 | || ||| | || |||||| ||||| ||||||||||| |||||| Sbjct 31351 G--CCATTGATCTTCAACAGGTAGGACCGCTCCAGCGTCTTGAAGCCAAAG 31399 >seq7404 Length=21843 Score = 123 bits (136), Expect = 5e-23 Identities = 105/127 (83%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 |||| ||||| ||||||| ||||| ||||||||||| || ||||||| | ||||||| Sbjct 16107 TGGTGGCCTTCGCCGCCGTGGAGGGAATCTTCTTCTCTGGTTCCTTCGCTGCGATCTTCT 16166 Query 42766 GGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824 |||| ||| ||| ||| | ||||||||| || |||||||| ||||| ||||||||||| Sbjct 16167 GGCTGAAGAAGAGAGGCCT-GATGCCCGGCCTGACCTTCTCCAACGAGCTCATCAGCAGA 16225 Query 42825 GACGAGG 42831 ||||||| Sbjct 16226 GACGAGG 16232 Score = 96.9 bits (106), Expect = 7e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 43070 CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCG 43129 |||||||||||| |||||||||||||| ||||||| ||||||||||| ||||||||||| Sbjct 17667 CCCCTTCGACTTCATGGAGAACATCTCTCTGGAGGGAAAGACCAACTTCTTCGAGAAGCG 17726 Query 43130 CGTCGCCGACTACCAG 43145 || | ||| |||||| Sbjct 17727 TGTGGGCGAGTACCAG 17742 >seq1161 Length=118247 Score = 109 bits (120), Expect = 1e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 244097 ACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATG 244156 |||||||||||||| || ||||| | ||| ||||| ||||||| || | ||| ||| Sbjct 54939 ACCTGAAACTCTCCTGAGAGCACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCCTCAATG 54880 Query 244157 CTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGA 244216 ||| |||||||||| ||||| || ||| || || |||||||| | || |||||| Sbjct 54879 GACTCATTGTTGCCCAGGATCTGGGCAGTGGAAGCTGTGGGCATGGGGGCCAAGAGCAGA 54820 Query 244217 CTGTTCCTCACGCCGTGCCT 244236 ||||||||||| || ||||| Sbjct 54819 CTGTTCCTCACACCATGCCT 54800 Score = 98.7 bits (108), Expect = 2e-15 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 244705 CACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGT 244764 |||||| || | | ||||||| || ||||| ||||| || || ||| | |||||||| Sbjct 53960 CACCTCGTCTTTGCTTGTGTACTCTACGATCTCCGTGCACAGATTGCTGGATTTGATGGT 53901 Query 244765 GCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCC 244824 |||||| | ||| || ||| ||| ||||||||||||||||||||||||| | ||| Sbjct 53900 GCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGCGT 53841 Query 244825 CCCGGTCTC 244833 ||||| || Sbjct 53840 ACCGGTTTC 53832 >seq49 Length=318415 Score = 96.9 bits (106), Expect = 7e-15 Identities = 105/137 (77%), Gaps = 2/137 (1%) Strand=Plus/Minus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || ||| | || || || ||| | || || ||||||||||||||||| ||| | ||||| Sbjct 81438 GGGGAGCGACTTGTGGCTTTTGCAGCAGTGGAGGGCATCTTCTTCTCCGGCTCATTCGCT 81379 Query 42756 TCCATCTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACT 42814 |||||| ||||||||| ||| ||| | ||||| || || |||| ||| ||||| || Sbjct 81378 GCCATCTATTGGCTCAAGAAGAGAGGACT-AATGCCTGGCCTTACCTACTCCAACGAGCT 81320 Query 42815 CATCAGCAGGGACGAGG 42831 || |||||||| |||| Sbjct 81319 GATTAGCAGGGATGAGG 81303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944124386440480