Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maccullochella_20peelii_20[genbank_20GCA_5F002120245.1_202017-05-09] 18,198 sequences; 633,241,041 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq112 89.7 5e-13 >seq112 Length=268450 Score = 89.7 bits (98), Expect = 5e-13 Identities = 102/136 (75%), Gaps = 1/136 (1%) Strand=Plus/Plus Query 20263 AGTTAAGAGG-GAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCATGTCTCCCGACC 20321 || ||||| | | ||||||||| || || ||||| || |||| ||||| || ||||| | Sbjct 20181 AGGTAAGAAGTGCATAGCTGGCTATATTGAAAGGCACCCCCAGGCCCATATCACCCGAAC 20240 Query 20322 TCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGACATAACAAGTGAC 20381 ||| ||||||||||| || |||||||| ||| || || || ||||| | ||| | Sbjct 20241 GCTGGTACAGCTGACACGACAGCTCACCATCACACACGTAGAACTGACACAGGGCGTGGC 20300 Query 20382 AGGGCGGAAGCGCCAT 20397 |||| || || ||||| Sbjct 20301 AGGGGGGCAGAGCCAT 20316 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 20527 GTACGCCGCCCCAAAGTGCCTCCACTGGAAACCGTAAACAGGTCCCAAATCCCCCTCCCT 20586 |||| | || ||||||||||||||||||||||| || |||||||||| || || ||| Sbjct 21406 GTACTCGGCACCAAAGTGCCTCCACTGGAAACCATACACAGGTCCCAGGTCGCCTTCCTC 21465 Query 20587 TCTGTGCGCCAGGCCGCGCCCGGCCAGGAACTCCCTGGAGCCATTTTTGTCCCATATCTT 20646 ||| | | | ||| | | ||||||| |||| ||| ||||| ||||| ||||| Sbjct 21466 TCTATCAGTGAAGCCAAGGTTGTCCAGGAAGTCCCGGGACCCATTGGCATCCCAAATCTT 21525 Query 20647 GACTCCTGTTCTTGAAAGCTCCCTGG 20672 || ||| | || |||||| ||| Sbjct 21526 TACCCCTTTCGCCGAGAGCTCCTTGG 21551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441272398722320