Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maccullochella_20peelii_20[genbank_20GCA_5F002120245.1_202017-05-09] 18,198 sequences; 633,241,041 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq16938 89.7 4e-13 seq14878 89.7 4e-13 seq10554 89.7 4e-13 seq5128 89.7 4e-13 seq4849 89.7 4e-13 seq3162 82.4 6e-11 >seq16938 Length=7138 Score = 89.7 bits (98), Expect = 4e-13 Identities = 75/88 (85%), Gaps = 3/88 (3%) Strand=Plus/Plus Query 114331 TGTCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAAC-TGAGTAAGATCTAAGG 114387 || |||||||| ||||||||||| |||| |||||||||||||| | || |||| |||| Sbjct 3102 TGGCATGTATTAGCTCTAGAATTGCCACAGTTATCCAAGTAACGTTAGAGCGATCAAAGG 3161 Query 114388 AACCAAAACTGATATATTGAGCCATTCG 114415 ||||| ||||||| || ||||||||||| Sbjct 3162 AACCATAACTGATTTAATGAGCCATTCG 3189 Score = 89.7 bits (98), Expect = 4e-13 Identities = 75/88 (85%), Gaps = 3/88 (3%) Strand=Plus/Plus Query 115528 TGTCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAAC-TGAGTAAGATCTAAGG 115584 || |||||||| ||||||||||| |||| |||||||||||||| | || |||| |||| Sbjct 3102 TGGCATGTATTAGCTCTAGAATTGCCACAGTTATCCAAGTAACGTTAGAGCGATCAAAGG 3161 Query 115585 AACCAAAACTGATATATTGAGCCATTCG 115612 ||||| ||||||| || ||||||||||| Sbjct 3162 AACCATAACTGATTTAATGAGCCATTCG 3189 Score = 82.4 bits (90), Expect = 6e-11 Identities = 72/86 (84%), Gaps = 3/86 (3%) Strand=Plus/Plus Query 114333 TCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAAC-TGAGTAAGATCTAAGGAA 114389 |||| |||| ||||||||||| |||| |||||||||||||| | || |||| |||||| Sbjct 3891 TCATCTATTAGCTCTAGAATTGCCACAGTTATCCAAGTAACGTTAGAGCGATCAAAGGAA 3950 Query 114390 CCAAAACTGATATATTGAGCCATTCG 114415 ||| ||||||| || | ||||||||| Sbjct 3951 CCATAACTGATTTAATAAGCCATTCG 3976 Score = 82.4 bits (90), Expect = 6e-11 Identities = 72/86 (84%), Gaps = 3/86 (3%) Strand=Plus/Plus Query 115530 TCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAAC-TGAGTAAGATCTAAGGAA 115586 |||| |||| ||||||||||| |||| |||||||||||||| | || |||| |||||| Sbjct 3891 TCATCTATTAGCTCTAGAATTGCCACAGTTATCCAAGTAACGTTAGAGCGATCAAAGGAA 3950 Query 115587 CCAAAACTGATATATTGAGCCATTCG 115612 ||| ||||||| || | ||||||||| Sbjct 3951 CCATAACTGATTTAATAAGCCATTCG 3976 >seq14878 Length=5361 Score = 89.7 bits (98), Expect = 4e-13 Identities = 75/88 (85%), Gaps = 3/88 (3%) Strand=Plus/Minus Query 115528 TGTCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAAC-TGAGTAAGATCTAAGG 115584 || |||||||| ||||||||||| |||| |||||||||||||| | || |||| |||| Sbjct 1088 TGGCATGTATTAGCTCTAGAATTGCCACAGTTATCCAAGTAACGTTAGAGCGATCAAAGG 1029 Query 115585 AACCAAAACTGATATATTGAGCCATTCG 115612 ||||| ||||||| || ||||||||||| Sbjct 1028 AACCATAACTGATTTAATGAGCCATTCG 1001 Score = 89.7 bits (98), Expect = 4e-13 Identities = 75/88 (85%), Gaps = 3/88 (3%) Strand=Plus/Minus Query 114331 TGTCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAAC-TGAGTAAGATCTAAGG 114387 || |||||||| ||||||||||| |||| |||||||||||||| | || |||| |||| Sbjct 1088 TGGCATGTATTAGCTCTAGAATTGCCACAGTTATCCAAGTAACGTTAGAGCGATCAAAGG 1029 Query 114388 AACCAAAACTGATATATTGAGCCATTCG 114415 ||||| ||||||| || ||||||||||| Sbjct 1028 AACCATAACTGATTTAATGAGCCATTCG 1001 >seq10554 Length=21645 Score = 89.7 bits (98), Expect = 4e-13 Identities = 75/88 (85%), Gaps = 3/88 (3%) Strand=Plus/Plus Query 114331 TGTCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAAC-TGAGTAAGATCTAAGG 114387 || |||||||| ||||||||||| |||| |||||||||||||| | || |||| |||| Sbjct 5348 TGGCATGTATTAGCTCTAGAATTGCCACAGTTATCCAAGTAACGTTAGAGCGATCAAAGG 5407 Query 114388 AACCAAAACTGATATATTGAGCCATTCG 114415 ||||| ||||||| || ||||||||||| Sbjct 5408 AACCATAACTGATTTAATGAGCCATTCG 5435 Score = 89.7 bits (98), Expect = 4e-13 Identities = 75/88 (85%), Gaps = 3/88 (3%) Strand=Plus/Plus Query 115528 TGTCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAAC-TGAGTAAGATCTAAGG 115584 || |||||||| ||||||||||| |||| |||||||||||||| | || |||| |||| Sbjct 5348 TGGCATGTATTAGCTCTAGAATTGCCACAGTTATCCAAGTAACGTTAGAGCGATCAAAGG 5407 Query 115585 AACCAAAACTGATATATTGAGCCATTCG 115612 ||||| ||||||| || ||||||||||| Sbjct 5408 AACCATAACTGATTTAATGAGCCATTCG 5435 >seq5128 Length=30737 Score = 89.7 bits (98), Expect = 4e-13 Identities = 75/88 (85%), Gaps = 3/88 (3%) Strand=Plus/Plus Query 114331 TGTCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAAC-TGAGTAAGATCTAAGG 114387 || |||||||| ||||||||||| |||| |||||||||||||| | || |||| |||| Sbjct 442 TGGCATGTATTAGCTCTAGAATTGCCACAGTTATCCAAGTAACGTTAGAGCGATCAAAGG 501 Query 114388 AACCAAAACTGATATATTGAGCCATTCG 114415 ||||| ||||||| || ||||||||||| Sbjct 502 AACCATAACTGATTTAATGAGCCATTCG 529 Score = 89.7 bits (98), Expect = 4e-13 Identities = 75/88 (85%), Gaps = 3/88 (3%) Strand=Plus/Plus Query 115528 TGTCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAAC-TGAGTAAGATCTAAGG 115584 || |||||||| ||||||||||| |||| |||||||||||||| | || |||| |||| Sbjct 442 TGGCATGTATTAGCTCTAGAATTGCCACAGTTATCCAAGTAACGTTAGAGCGATCAAAGG 501 Query 115585 AACCAAAACTGATATATTGAGCCATTCG 115612 ||||| ||||||| || ||||||||||| Sbjct 502 AACCATAACTGATTTAATGAGCCATTCG 529 >seq4849 Length=39343 Score = 89.7 bits (98), Expect = 4e-13 Identities = 75/88 (85%), Gaps = 3/88 (3%) Strand=Plus/Minus Query 115528 TGTCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAAC-TGAGTAAGATCTAAGG 115584 || |||||||| ||||||||||| |||| |||||||||||||| | || |||| |||| Sbjct 37063 TGGCATGTATTAGCTCTAGAATTGCCACAGTTATCCAAGTAACGTTAGAGCGATCAAAGG 37004 Query 115585 AACCAAAACTGATATATTGAGCCATTCG 115612 ||||| ||||||| || ||||||||||| Sbjct 37003 AACCATAACTGATTTAATGAGCCATTCG 36976 Score = 89.7 bits (98), Expect = 4e-13 Identities = 75/88 (85%), Gaps = 3/88 (3%) Strand=Plus/Minus Query 114331 TGTCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAAC-TGAGTAAGATCTAAGG 114387 || |||||||| ||||||||||| |||| |||||||||||||| | || |||| |||| Sbjct 37063 TGGCATGTATTAGCTCTAGAATTGCCACAGTTATCCAAGTAACGTTAGAGCGATCAAAGG 37004 Query 114388 AACCAAAACTGATATATTGAGCCATTCG 114415 ||||| ||||||| || ||||||||||| Sbjct 37003 AACCATAACTGATTTAATGAGCCATTCG 36976 Score = 82.4 bits (90), Expect = 6e-11 Identities = 72/86 (84%), Gaps = 3/86 (3%) Strand=Plus/Minus Query 115530 TCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAAC-TGAGTAAGATCTAAGGAA 115586 |||| |||| ||||||||||| |||| |||||||||||||| | || |||| |||||| Sbjct 36274 TCATCTATTAGCTCTAGAATTGCCACAGTTATCCAAGTAACGTTAGAGCGATCAAAGGAA 36215 Query 115587 CCAAAACTGATATATTGAGCCATTCG 115612 ||| ||||||| || | ||||||||| Sbjct 36214 CCATAACTGATTTAATAAGCCATTCG 36189 Score = 82.4 bits (90), Expect = 6e-11 Identities = 72/86 (84%), Gaps = 3/86 (3%) Strand=Plus/Minus Query 114333 TCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAAC-TGAGTAAGATCTAAGGAA 114389 |||| |||| ||||||||||| |||| |||||||||||||| | || |||| |||||| Sbjct 36274 TCATCTATTAGCTCTAGAATTGCCACAGTTATCCAAGTAACGTTAGAGCGATCAAAGGAA 36215 Query 114390 CCAAAACTGATATATTGAGCCATTCG 114415 ||| ||||||| || | ||||||||| Sbjct 36214 CCATAACTGATTTAATAAGCCATTCG 36189 >seq3162 Length=48913 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||||||||| || ||||| ||||| || ||| ||||||||| |||||||| || | Sbjct 2586 CCTCCTCTCAGACGGAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 2527 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | || | || |||| |||||||| ||||| ||||| |||||||| || Sbjct 2526 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTC 2474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396974336274796