Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maccullochella_20peelii_20[genbank_20GCA_5F002120245.1_202017-05-09] 18,198 sequences; 633,241,041 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq3162 143 6e-29 seq6074 120 7e-22 >seq3162 Length=48913 Score = 143 bits (158), Expect = 6e-29 Identities = 171/231 (74%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| || ||||| | || || || || | ||| || || ||||| || ||||||| Sbjct 3043 TCCTCCACGGAGACGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 2984 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 ||| ||||| || ||||| | || || || || |||||||||||||| || ||||| Sbjct 2983 GAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGG---TCTGG 2927 Query 288366 ---GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 ||| ||||| ||||||||||| || || |||||||| || |||| || || | || Sbjct 2926 AGGGATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCAATAGTGTCACTTGGCTC 2867 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| ||||| || ||||| ||||| ||||| |||||||| Sbjct 2866 AACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 2816 Score = 136 bits (150), Expect = 9e-27 Identities = 148/195 (76%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||| ||||| || ||||||| ||| ||||| || ||||| | || || || || || Sbjct 2779 TTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAA 2720 Query 288342 GATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 |||||||||||| || ||||| ||| ||||| ||||||||||| || || ||||| Sbjct 2719 GATCAGACGCTGCTGG---TCTGGAGGGATGCCTTCCTTATCCTGGATCTTGGCCTTCAC 2663 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 || || |||| || || | || || || || ||||| ||||| || ||||| ||||| Sbjct 2662 ATTCTCAATAGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTT 2603 Query 288459 GACGAATATCTGCAT 288473 || || |||||||| Sbjct 2602 CACAAAAATCTGCAT 2588 Score = 125 bits (138), Expect = 2e-23 Identities = 160/219 (73%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || || ||||| | ||| || || ||||| || ||||||| ||| ||||| || ||| Sbjct 2571 AGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCT 2512 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTA 288378 || | || || || || |||||||||||||| || ||||| ||| || || ||| Sbjct 2511 TCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGG---TCTGGAGGGATGCCCTCCTTA 2455 Query 288379 TCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATC 288438 |||||||| || ||||| || ||||| || | || || | || || || | ||||| Sbjct 2454 TCCTGGATCTTGGCTTTGACATTTTCAATGGTGTCACTGGGCTCAACCTCCAAAGTGATG 2395 Query 288439 GTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 ||||| || ||||| ||||| || || ||||||||| || Sbjct 2394 GTCTTGCCAGTCAGGGTCTTCACAAAAATCTGCATTTTG 2356 >seq6074 Length=24291 Score = 120 bits (132), Expect = 7e-22 Identities = 167/233 (72%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || ||||| | || | || || ||||| | ||| || || ||||| || ||||| Sbjct 3728 TGCCCACCCCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCA 3787 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 | ||| ||||| || ||||| | || || || || |||||||| | ||| || ||| Sbjct 3788 GAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGG---TCT 3844 Query 288364 GGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT 288420 ||| || ||||| || ||||||||||| || || || || || || | ||||| | Sbjct 3845 GGGGGAATGCCTTCCTTGTCCTGGATTTTAGCCTTGACATTCTCAATGGTGTCGCTGGGC 3904 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || ||||| ||||| || || || ||||||||||| |||||||| Sbjct 3905 TCGACCTCCAGGGTGATGGTCTTACCAGTGAGGGTCTTGACGAAGATCTGCAT 3957 Score = 120 bits (132), Expect = 7e-22 Identities = 169/235 (72%), Gaps = 7/235 (3%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| | || | || || ||||| | ||| || || ||||| || |||| Sbjct 4790 CATG-CCACCCCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGT 4848 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | ||| ||||| || ||||| | ||||| || || |||||||| | ||| || | Sbjct 4849 CAGAGAGGGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGG---T 4905 Query 288362 CTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418 ||||| || ||||| || ||||||||||| || || || || || || | ||||| | Sbjct 4906 CTGGGGGAATGCCTTCCTTGTCCTGGATTTTAGCCTTGACATTCTCAATGGTGTCGCTGG 4965 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || ||||| ||||| || || || |||||||| || |||||||| Sbjct 4966 GCTCCACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCAT 5020 Score = 111 bits (122), Expect = 4e-19 Identities = 165/233 (71%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || ||||| | || | || || ||||| | ||| || || ||||| || ||||| Sbjct 4563 TGCCCACCCCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCA 4622 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 | ||| ||||| || ||||| | || || || || |||||||| | ||| || ||| Sbjct 4623 GAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGG---TCT 4679 Query 288364 GGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT 288420 ||| || ||||| || ||||||||||| || || || || || || | || || | Sbjct 4680 GGGGGAATGCCTTCCTTGTCCTGGATTTTAGCCTTGACATTCTCAATGGTGTCACTGGGC 4739 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || ||||| ||||| || || || |||||||| || |||||||| Sbjct 4740 TCGACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCAT 4792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179379349568244