Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maccullochella_20peelii_20[genbank_20GCA_5F002120245.1_202017-05-09] 18,198 sequences; 633,241,041 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq4239 194 2e-44 seq7404 98.7 1e-15 seq1161 95.1 1e-14 >seq4239 Length=33969 Score = 194 bits (214), Expect = 2e-44 Identities = 842/1312 (64%), Gaps = 56/1312 (4%) Strand=Plus/Plus Query 113942 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAG 114001 ||||| ||| | ||||| | |||| |||||||||| |||| ||| |||||||||||| Sbjct 29960 TAGATGTTGCTGGTGTAAGCTTCAATAGACTCATTGTTGCCCAGGATCTGGGCGGTGGAG 30019 Query 114002 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCC 114061 ||||||||||| || |||| || || ||||| | | || | | ||| ||| Sbjct 30020 GCTGTGGGCATCGGGGCCAGCAGCAGACTGTTCCTCACGCCGTGCTTGGCAATCTTCTCC 30079 Query 114062 TTGAGGGCGTCCCAGTC------GTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAAC 114115 || || | |||||| || | || | ||||| | || ||||| || || Sbjct 30080 TTCAGCAGCTTCCAGTCCAGCAGGTCGGTGGG---TGTCTTCTCC---CACATGTCGTAC 30133 Query 114116 TGGAGGATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTC- 114174 |||||||| || | | | | || || || || | ||||| || ||||| || ||| Sbjct 30134 TGGAGGATGCCGTTGCTGACGGGAGAGCCTTCGTACGTCTCATAGGGGCC---AAGCTCA 30190 Query 114175 --CGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCA 114232 ||||| ||| |||| ||||| ||||| |||| || || |||||||| || || Sbjct 30191 GCCGCCAGCTCGCAGCTTGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATCTGAATG 30250 Query 114233 TTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCG 114292 |||| || |||||| | || |||| | || | || || |||| || Sbjct 30251 TTCAGCAGCTGAGCCTCGGGGCTTTCGAACGGGTAACGCATGAGGATGAAGGCATCGGCC 30310 Query 114293 AGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCC 114352 | ||| |||||||||| || ||||| | || | | | || |||||| || | Sbjct 30311 AAACCCTGGACACCGATTCCTATTGGCCTGTGACGCTTGTTGGACTTTTCTGCTTCAGGC 30370 Query 114353 ACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATT 114412 || ||||| || || | || || | | | |||| |||||| | || || || | Sbjct 30371 ACTGGATAGAAGTTAATCTCAATTATCTTGTTTAAGTTTTTGACTATTACTTTGGTCA-- 30428 Query 114413 TCATGAAGCT--TTTCGTAA--TCAAAACTGCGAGTCTCTTCAT---TGACATACTTAGG 114465 ||| | ||| |||| ||| |||||| |||| ||| |||| ||| | Sbjct 30429 -CAT-ACGCTAGTTTCTTAAAGTCAAAA------GTCTGCTCAGGGGTGACGTACATGTT 30480 Query 114466 AAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAAT 114525 || || || || ||||||||||| |||| |||||| | ||||| || || || Sbjct 30481 GAGTGCAATGGAGGCCAGATTACAGACAGCCACCTCATCGTGGCTGGTGTATTCAATGAT 30540 Query 114526 TTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTT 114585 ||| || || | || ||||| |||||||| | |||| || || ||| |||| Sbjct 30541 TTCTGTGCAGAGGTTGCTGCTCTTGATGGTGCCTAGATTCTGCTGGTTGCTCTTCCTGTT 30600 Query 114586 ACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGC 114645 ||||| |||||||| |||||||||||||| || || || || ||||||| || ||| || Sbjct 30601 GCACGCGTCCTTGTACAGCATGTATGGCGTACCGGTTTCTGTCTGGGACTCGATAATGGC 30660 Query 114646 CTTCCAGA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTG 114704 | ||| | | | | | || ||| | ||| | | |||||||| ||| || | | Sbjct 30661 GTGCCACAGCTGCTGAGCCT-TCACCAAGCGCTTGACCCTCCCCTCCTTCTCATATGTGG 30719 Query 114705 TGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGC 114764 | ||||| |||||||| || ||| | ||| ||||| || || | ||| | Sbjct 30720 TATAGAGCTTCTCAAACTCCTCCCCCCAGCACTCGTCCAGCCCCGGGCACTCACTTGGAC 30779 Query 114765 AGAAGAGAGACCA---TTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCC 114821 | | |||||||| ||| | ||| || | ||||||||| ||||| ||||||| Sbjct 30780 ACATCAGAGACCAGTCTTGGTTGCTTTCC---ACTCTCTTCATGAACAGGTCGGGGATCC 30836 Query 114822 AGAGAGCTGAGAAGAGATC-CCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAAC 114880 | | || |||| ||||| | | | ||| || | | || || || || | Sbjct 30837 ACATGGCGTAGAAAAGATCTCTGGCTCTCTGCTCCTCCTTTCCTGTG-TTCTTCTTCAGC 30895 Query 114881 TCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACC----C 114936 |||| ||||| | | ||| |||||| || |||||||||| || | | | | Sbjct 30896 TCCAGGAAGTCAAACACATCAAAGTGCCAGGGCTCCAGGTACATGGCAAAGGCTCCGGGC 30955 Query 114937 CTTACGACGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGG 114996 || | | ||| |||||| ||||| | |||||| ||| | || | ||||| || Sbjct 30956 CTCTTGTTG-CCACCCTGGTCGACATAACGTGCTGTGTTGTTATAAACTCTCAGCATGGG 31014 Query 114997 AATGATACCATCAGATTGGCCATTTGT-CCCCCGAATACGAGACTTATTGGCTCTGA--C 115053 | | |||| || | ||| ||||| || ||| | | || | ||||| | Sbjct 31015 GACTAGCCCATTGGAGTTGCCGTTTGTGCCAGCGATGTAGCTCCCCGTT-GATCTGATGC 31073 Query 115054 ATCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAG 115113 | | || || || || || || || ||| ||||| | || || | | | || Sbjct 31074 AGC--TGACCGCCACGCCGATTCCTCCAGCTGCCTTGGAGATGAGGGCACATTGCTTCAG 31131 Query 115114 ACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACAT 115173 || | || || || ||||| ||| | || | |||| ||||||||||| |||| Sbjct 31132 CGTGTCATAAATGCCTTCGATGCTGTCGTCTTTCATGGCGAGCAGGAAGCAGCTGGACAG 31191 Query 115174 TTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAAC 115225 |||||||| || || ||||||||||| || || | |||||| ||||| Sbjct 31192 CTGTGGCCTGTTGGTTCCTGCGTTGAAGAGCGTAGGGGAGGCGTGGGTGAAC 31243 >seq7404 Length=21843 Score = 98.7 bits (108), Expect = 1e-15 Identities = 87/109 (80%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 126066 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTCT 126125 ||||||| | | |||||| || || |||||| ||| || ||||| || || | ||||| Sbjct 16232 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 16173 Query 126126 TCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCAC 126174 ||| |||||| |||||| || ||||| |||||||||||||||||||| Sbjct 16172 TCAGCCAGAAGATCGCAGCGAAGGAACCAGAGAAGAAGATTCCCTCCAC 16124 >seq1161 Length=118247 Score = 95.1 bits (104), Expect = 1e-14 Identities = 76/92 (83%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 113942 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAG 114001 ||||| ||| | ||||| | ||||| | |||||||||| |||| ||| ||||| ||||| Sbjct 54906 TAGATGTTGCTGGTGTAGGCCTCAATGGACTCATTGTTGCCCAGGATCTGGGCAGTGGAA 54847 Query 114002 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 114033 |||||||||||||| |||| ||| || ||||| Sbjct 54846 GCTGTGGGCATGGGGGCCAAGAGCAGACTGTT 54815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597217716989840