Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maccullochella_20peelii_20[genbank_20GCA_5F002120245.1_202017-05-09] 18,198 sequences; 633,241,041 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq3162 114 1e-20 seq2793 91.5 2e-13 seq3928 89.7 6e-13 seq12627 87.8 2e-12 seq2507 87.8 2e-12 seq11366 84.2 2e-11 seq11055 84.2 2e-11 seq9773 84.2 2e-11 seq5808 84.2 2e-11 seq2899 82.4 8e-11 seq670 82.4 8e-11 seq654 82.4 8e-11 seq403 82.4 8e-11 >seq3162 Length=48913 Score = 114 bits (126), Expect = 1e-20 Identities = 165/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 |||||||| | ||| | ||| | ||| | ||| |||||| || || ||||| || | Sbjct 2586 CCTCCTCTCAGACGGAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 2527 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || || | || || |||||||| ||||| || || || ||||||||||| | || Sbjct 2526 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCTGGAGGG 2467 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | || |||||| ||| ||| || ||||| | | | ||||| || | || || Sbjct 2466 ATGCCCTCCTTATCCTGGATCTTGGCTTTGACATTTTCAATGGTGTCACTGGGCTCAACC 2407 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTCAC 42214 || | |||||||| ||||| || || ||||| ||||| || |||||||| || Sbjct 2406 TCCAAAGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAAATCTGCATTTTGAC 2354 Score = 86.0 bits (94), Expect = 7e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||| || | ||| | |||| || | |||| || || || || ||||| || | Sbjct 2814 CCTCCCCTCAGACGGAGGACCAGGTGGAGTGTGGATTCTTTCTGGATGTTGTAGTCGGAG 2755 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || || | || || |||||||| ||||| || || || ||||||||||| | || Sbjct 2754 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCTGGAGGG 2695 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | || ||||| ||| ||| || || | || | | ||||| || | || || Sbjct 2694 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCAATAGTGTCACTGGGCTCAACC 2635 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | |||||||| ||||| || || ||||| ||||| || ||||| Sbjct 2634 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAAATCTGCAT 2588 Score = 86.0 bits (94), Expect = 7e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || | || || || | || || |||||||| ||||| || Sbjct 3007 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAA 2948 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || ||||||||||| | || | || ||||| ||| ||| || || | | Sbjct 2947 GATCAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTT 2888 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | | ||||| || | || || || | |||||||| ||||| || || ||||| || Sbjct 2887 CTCAATAGTGTCACTTGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 2828 Query 42197 AAAGATTTGCAT 42208 ||||| ||||| Sbjct 2827 GAAGATCTGCAT 2816 >seq2793 Length=114742 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 57004 TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 57063 || |||| || | | |||||||||| ||||||||||||||||||||| |||||||||| Sbjct 49708 TTACTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCA 49767 Query 57064 CTATACTACCGAGGA 57078 |||||||| |||||| Sbjct 49768 CTATACTAACGAGGA 49782 >seq3928 Length=41898 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 11339 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 11280 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 11279 TACTAACGAGGA 11268 >seq12627 Length=1423 Score = 87.8 bits (96), Expect = 2e-12 Identities = 68/80 (85%), Gaps = 1/80 (1%) Strand=Plus/Minus Query 57000 AAAT-TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 57058 |||| ||||||| || | | |||||||||| ||||| |||||||||||||||| ||||| Sbjct 417 AAATATTTCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACT 358 Query 57059 CACCACTATACTACCGAGGA 57078 ||||||||||| |||||| Sbjct 357 GTCCACTATACTAACGAGGA 338 >seq2507 Length=60545 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 57003 TTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 57062 |||||||| || | | |||||||||| ||||| |||||||||||||||| ||||| || Sbjct 39874 TTTTCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCC 39933 Query 57063 ACTATACTACCGAGGA 57078 ||||||||| |||||| Sbjct 39934 ACTATACTAACGAGGA 39949 >seq11366 Length=3798 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064 |||||| || | | |||||||||| ||||| |||||||||||||||| ||||| |||| Sbjct 1784 TTCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCAC 1843 Query 57065 TATACTACCGAGGA 57078 ||||||| |||||| Sbjct 1844 TATACTAACGAGGA 1857 >seq11055 Length=4015 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064 |||||| || | | |||||||||| ||||| |||||||||||||||| ||||| |||| Sbjct 3170 TTCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCAC 3111 Query 57065 TATACTACCGAGGA 57078 ||||||| |||||| Sbjct 3110 TATACTAACGAGGA 3097 >seq9773 Length=5142 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064 |||||| || | | |||||||||| ||||| |||||||||||||||| ||||| |||| Sbjct 380 TTCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCAC 321 Query 57065 TATACTACCGAGGA 57078 ||||||| |||||| Sbjct 320 TATACTAACGAGGA 307 >seq5808 Length=40005 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064 |||||| || | | |||||||||| ||||| |||||||||||||||| ||||| |||| Sbjct 37557 TTCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCAC 37498 Query 57065 TATACTACCGAGGA 57078 ||||||| |||||| Sbjct 37497 TATACTAACGAGGA 37484 >seq2899 Length=82969 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||| |||||||||||||||| ||||| ||||| Sbjct 82552 TCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACT 82611 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 82612 ATACTAACGAGGA 82624 >seq670 Length=181554 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||| ||||| ||||||||||||||||||||| | |||||||||| Sbjct 108423 TCTCCCCGTCGGGGAATCAAACCCCGGTCTCCCGCGTGACAGGCGGGGACACTCACCACT 108364 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 108363 ATACTAACGAGGA 108351 >seq654 Length=178055 Score = 82.4 bits (90), Expect = 8e-11 Identities = 76/95 (80%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||| |||||||||||||||| ||||| |||||| Sbjct 142032 CTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACTA 141973 Query 57067 TACTACCGAGGATTGAATATATAACTTGAATATTG 57101 ||||| |||| ||| ||||| ||| |||||| Sbjct 141972 TACTAACGAG----GAAGGTATAA-TTGTATATTG 141943 >seq403 Length=176171 Score = 82.4 bits (90), Expect = 8e-11 Identities = 70/86 (81%), Gaps = 3/86 (3%) Strand=Plus/Minus Query 56996 TGAAAAATTTT---CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGA 57052 |||||| ||| |||| || | | ||| |||||| ||||||||||||||||||||| Sbjct 71239 TGAAAAGCTTTACACTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGG 71180 Query 57053 CATACTCACCACTATACTACCGAGGA 57078 ||||| |||||||||||| |||||| Sbjct 71179 GATACTGACCACTATACTAACGAGGA 71154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543089232668320