Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maccullochella_20peelii_20[genbank_20GCA_5F002120245.1_202017-05-09] 18,198 sequences; 633,241,041 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq3162 125 7e-24 seq6074 116 4e-21 seq356 102 8e-17 >seq3162 Length=48913 Score = 125 bits (138), Expect = 7e-24 Identities = 159/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| ||||| | || || || || || |||||||| || | || |||||| | ||| Sbjct 2571 AGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCT 2512 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| ||| | || || ||||||||||| ||||| || || || || || Sbjct 2511 TCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCTGGAGGGATGCCCTCCTTATCC 2452 Query 64352 TGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || | | || ||||| ||| || | || |||| || || || || | ||| | ||| Sbjct 2451 TGGA-TCTTGGCTTTGACATTTTCAATGGTGTCACTGGGCTCAACCTCCAAAGTGATGGT 2393 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 |||||| |||| || || || ||||| |||||||| Sbjct 2392 CTTGCCAGTCAGGGTCTTCACAAAAATCTGCATTTT 2357 Score = 125 bits (138), Expect = 7e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || |||||||| || |||||||| || | || |||||| | ||||| ||||||||||| Sbjct 2784 GTGGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCA 2725 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || || ||||||||||| ||||| || ||||| || || || || || ||| Sbjct 2724 GCAAAGATCAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTATCCTGGATCTTGGCCTTC 2665 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | || |||| || || || || | || | ||||||||| |||| || Sbjct 2664 ACATTCTCAATAGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTC 2605 Query 64427 TTTACGAAAATTTGCAT 64443 || || ||||| ||||| Sbjct 2604 TTCACAAAAATCTGCAT 2588 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || |||||||| || | || |||||| | ||||| ||||||||||| Sbjct 3012 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCA 2953 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || || ||||||||||| ||||| || ||||| || || || || || ||| Sbjct 2952 GCAAAGATCAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTATCCTGGATCTTGGCCTTC 2893 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || ||| | || |||| | || || || | || | ||||||||| |||| || Sbjct 2892 ACGTTCTCAATAGTGTCACTTGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTC 2833 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| || ||||| Sbjct 2832 TTCACGAAGATCTGCAT 2816 >seq6074 Length=24291 Score = 116 bits (128), Expect = 4e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | || || || || || |||||||| || | || |||||| | ||| Sbjct 4581 AGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCT 4640 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| ||| | || |||| ||||||||| || ||||| ||||| || || Sbjct 4641 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCC 4700 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || ||||| ||| ||| ||| | || |||| || || || || | || | |||| Sbjct 4701 TGGATTTTAGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTC 4760 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| || | || || || || || ||||| Sbjct 4761 TTGCCAGTGAGGGTCTTGACAAAGATCTGCAT 4792 Score = 113 bits (124), Expect = 5e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | || || || || || |||||||| || | || |||||| | ||| Sbjct 3746 AGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCT 3805 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| ||| | || |||| ||||||||| || ||||| ||||| || || Sbjct 3806 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCC 3865 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || ||||| ||| ||| ||| | || || | || || || || | || | |||| Sbjct 3866 TGGATTTTAGCCTTGACATTCTCAATGGTGTCGCTGGGCTCGACCTCCAGGGTGATGGTC 3925 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || || | || || ||||| || ||||| Sbjct 3926 TTACCAGTGAGGGTCTTGACGAAGATCTGCAT 3957 Score = 91.5 bits (100), Expect = 1e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | || || || || || |||||||| || | || |||||| | ||| Sbjct 3974 AGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCT 4033 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| ||| | || |||| ||||||||| || ||||| ||||| || || Sbjct 4034 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCC 4093 Query 64352 TGTAT 64356 || || Sbjct 4094 TGGAT 4098 >seq356 Length=191405 Score = 102 bits (112), Expect = 8e-17 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 |||||| | || | || || ||||| | || || || || || |||||||| || | Sbjct 11451 ACCGCCCCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 11392 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || |||||| | ||||| ||||||||||||||| | || |||| ||||||||| || || Sbjct 11391 GAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGG 11332 Query 64336 AATTCCTTCTTTTTCTTGTATTTT 64359 ||| ||||| || || || ||||| Sbjct 11331 AATGCCTTCCTTGTCCTGGATTTT 11308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499531143299120