Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maccullochella_20peelii_20[genbank_20GCA_5F002120245.1_202017-05-09] 18,198 sequences; 633,241,041 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq4239 145 8e-30 seq1161 95.1 1e-14 >seq4239 Length=33969 Score = 145 bits (160), Expect = 8e-30 Identities = 589/924 (64%), Gaps = 8/924 (1%) Strand=Plus/Minus Query 93718 TACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGG 93777 ||| | | ||||| |||||| || |||||| ||| ||||| | ||||| |||||| Sbjct 31407 TACAACTTCTTTGGCTTCAAGACGCTGGAGCGGTCCTACCTGTTGAAGATCAATGGCAAA 31348 Query 93778 GTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGAC 93837 || ||||||| ||||| || |||| ||| | || || | ||||| ||| || Sbjct 31347 GTGGCCGAGCGGCCGCAGCACATGCTCATGAGAGTGGCTGTTGGGATCCACAAAACGGAT 31288 Query 93838 AT-GCCGAATGTTTTGCGGGCTTTCAGAGACATGCGG---GACAAGAGGTATACCATGGC 93893 || | || | | | | || || || || | || ||| ||| ||| || Sbjct 31287 ATCGACGCAGCCATCGAGACCTA-CA---ACCTGTTGTCAGAGAAGTGGTTCACCCACGC 31232 Query 93894 CACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGAT 93953 | |||| || || |||||||| || ||| ||||||| |||| || |||||| | Sbjct 31231 CTCCCCTACGCTCTTCAACGCAGGAACCAACAGGCCACAGCTGTCCAGCTGCTTCCTGCT 31172 Query 93954 GACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCAT 94013 | | || | |||| |||| || |||| |||| || ||| | ||||| ||| Sbjct 31171 CGCCATGAAAGACGACAGCATCGAAGGCATTTATGACACGCTGAAGCAATGTGCCCTCAT 31112 Query 94014 CTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTA 94073 ||| || || || |||||||| | ||| | | | | | | ||| ||| Sbjct 31111 CTCCAAGGCAGCTGGAGGAATCGGCGTGGCGGTCAGCTGCATCAGATCAACGGGGAGCTA 31052 Query 94074 CATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAA 94133 |||| || || || |||| |||||| || || ||||| ||||| | || | ||||| Sbjct 31051 CATCGCTGGCACAAACGGCAACTCCAATGGGCTAGTCCCCATGCTGAGAGTTTATAACAA 30992 Query 94134 CGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCT 94193 | | || || || || ||||||||||| | |||| || | || || | || || Sbjct 30991 CACAGCACGTTATGTCGACCAGGGTGGCAACAAGAGGCCCGGAGCCTTTGCCATGTACCT 30932 Query 94194 CGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGA 94253 |||||||||||| || ||| | ||| | || ||| |||||| || || || Sbjct 30931 GGAGCCCTGGCACTTTGATGTGTTTGACTTCCTGGAGCTGAAGAAGAACACAGGAAAGGA 30872 Query 94254 TCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACG 94313 | |||| |||||||| || |||||||| | ||| | || ||||| || ||||| | Sbjct 30871 GGAGCAGAGAGCCAGAGATCTTTTCTACGCCATGTGGATCCCCGACCTGTTCATGAAGAG 30812 Query 94314 CGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGA 94373 || || | ||| | |||| ||| | ||||| | ||| || || || ||| ||| Sbjct 30811 AGTGGAAAGCAACCAAGACTGGTCTCTGATGTGTCCAAGTGAGTGCCCGGGGCTGGACGA 30752 Query 94374 CGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGCCAG 94433 || || | ||||| | | ||| | || || | |||| | || || Sbjct 30751 GTGCTGGGGGGAGGAGTTTGAGAAGCTCTATACCACATATGAGAAGGAGGGGAGGGTCAA 30692 Query 94434 GAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGGG 94493 | | || | ||| | |||||||| | || | || ||| || || || Sbjct 30691 GCGCTTGGTGAAGGCTCAGCAGCTGTGGCACGCCATTATCGAGTCCCAGACAGAAACCGG 30632 Query 94494 TACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGG 94553 |||||| ||||| ||| ||||||| | |||| ||| |||||||||| | || || Sbjct 30631 TACGCCATACATGCTGTACAAGGACGCGTGCAACAGGAAGAGCAACCAGCAGAATCTAGG 30572 Query 94554 GGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAGAT 94613 ||||||||| || || ||||| || || | || || || | || ||| | Sbjct 30571 CACCATCAAGAGCAGCAACCTCTGCACAGAAATCATTGAATACACCAGCCACGATGAGGT 30512 Query 94614 TGCTGTGTGTAACCTGGGCTCCAT 94637 ||||| ||||| |||| |||||| Sbjct 30511 GGCTGTCTGTAATCTGGCCTCCAT 30488 >seq1161 Length=118247 Score = 95.1 bits (104), Expect = 1e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 95077 CACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATC 95136 || ||||||| ||| ||||| |||||||||||||||| || ||||| || |||||| Sbjct 54803 CATGGTGTGAGGAACAGTCTGCTCTTGGCCCCCATGCCCACAGCTTCCACTGCCCAGATC 54862 Query 95137 CTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTC 95196 || |||||||| ||||| | || ||| |||| |||| | |||| | | |||||||| Sbjct 54863 CTGGGCAACAATGAGTCCATTGAGGCCTACACCAGCAACATCTACACCCGCAGGGTGCTC 54922 Query 95197 GCCGGGGAATTCCCCGTCATCA 95218 | || || || | |||| || Sbjct 54923 TCAGGAGAGTTTCAGGTCAGCA 54944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494610662840080