Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maccullochella_20peelii_20[genbank_20GCA_5F002120245.1_202017-05-09] 18,198 sequences; 633,241,041 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq4239 140 3e-28 seq3162 100 3e-16 seq6074 98.7 1e-15 >seq4239 Length=33969 Score = 140 bits (154), Expect = 3e-28 Identities = 901/1434 (63%), Gaps = 56/1434 (4%) Strand=Plus/Plus Query 153075 TTGCTAGTGAAAGGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTC 153134 ||||| ||| ||| ||||| || || || ||||| || || || || |||| || || Sbjct 29966 TTGCTGGTGTAAGCTTCAATAGACTCATTGTTGCCCAGGATCTGGGCGGTGGAGGCTGTG 30025 Query 153135 GGCATGTACGCCACCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCCTTCAAC 153194 ||||| |||| || || | |||| || ||||||| ||| | ||||||| | Sbjct 30026 GGCATCGGGGCCAGCAGCAGACTGTTCCTCACGCCGTGCTTGGCAATCTTCTCCTTCAGC 30085 Query 153195 GCCTGCCAATCCCACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCCT 153254 || ||| ||| ||| | | |||||| | ||||||||||||||| | | || Sbjct 30086 AGCTTCCAGTCCAGCAGGTCGGTGGGTGTCTTCTCCCACATGTCGTACTGGAGGATGCCG 30145 Query 153255 CGACTGGCGGGACTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGG-GCCAGTTCGCA 153313 ||| ||||| ||| | |||| ||| ||| || | ||||| ||||| Sbjct 30146 TTGCTGACGGGAGAGCCTTCGTACGTCTCATAGGGGCCAA-GCTCAGCCGCCAGCTCGCA 30204 Query 153314 GCTAGCCTCGAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCGC 153373 ||| ||||| || ||| | ||||| ||||| || ||| || | || || | || Sbjct 30205 GCTTGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATCTGAATGTTCAGCAGCTGAGC 30264 Query 153374 TTCTTCGCTCTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACC 153433 || ||| ||| |||| |||| || | ||||| ||||||| |||||||| ||| Sbjct 30265 CTCGGGGCTTTCGAACGGGTAACGCATGAGGATGAAGGCATCGGCCAAACCCTGGACACC 30324 Query 153434 GACGCCGATGGGTC---GATGCTTCTCG----TTGCTGCGCCTCGCGCTCGCTATGGGAT 153486 || || || || | || |||| | | || |||| | || || | || || Sbjct 30325 GATTCCTATTGGCCTGTGACGCTTGTTGGACTTTTCTGCTTCAGGCACTGGATA---GA- 30380 Query 153487 AGTGATTGCGATCGATAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAA 153546 ||| | | || || || ||||| | ||| || | ||||| || | | | Sbjct 30381 AGTTAATC---TCAATTATCTTGTTTAAGTTTTTGACTATTACTTTGGTCACATACGCTA 30437 Query 153547 GTTTCTCGAAATCATAGGTCATTTCGTCGACG-CGTACGCATCGATTCACGGCAATAGAC 153605 |||||| || ||| | ||| || | | ||||| | || | ||||| || Sbjct 30438 GTTTCTTAAAGTCAAAAGTCTGCTCAGGGGTGACGTACATGTTGAGT----GCAATGGAG 30493 Query 153606 GCCAGATTACAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCAGAGG 153665 |||||||||||||| ||| ||| ||| | | |||| | | ||| || | ||||||| Sbjct 30494 GCCAGATTACAGACAGCCACCTCATCGTGGCTGGTGTATTCAATGATTTCTGTGCAGAGG 30553 Query 153666 TTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTG 153725 ||||||| || ||| ||| | ||| ||||| ||||| || | ||||||||||| ||| Sbjct 30554 TTGCTGCTCTTGATGGTGCCTAGATTCTGCTGGTTGCTCTTCCTGTTGCACGCGTCCTTG 30613 Query 153726 AAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGATAAACCTATG---CAGG 153782 | |||||||| || ||||| || || | | |||||| || ||| Sbjct 30614 TACAGCATGTATGGCGTACCGGTTTCTGTCTGGGACT---CGATAATGGCGTGCCACAGC 30670 Query 153783 TCCTGCGCTCGCACC---CGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGT 153839 | ||| || |||| |||| || | ||||| |||| ||| || || Sbjct 30671 TGCTGAGCCTTCACCAAGCGCT--TGA-CCCTCCCCTCCTTCTCATATGTGGTATAGAGC 30727 Query 153840 CGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGC 153899 ||||||||| || || |||| ||| | || || || |||| | ||||||||||| Sbjct 30728 TTCTCAAACTCCTCCCCCCAGCACTCGTCCAGCCCCGGGCACTCACTTGGACACATCAGA 30787 Query 153900 GACCACATATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTAC 153959 ||||| | || | | || | ||||||||| || || | ||| | ||||| Sbjct 30788 GACCAGTCTTGGTTGCTTTCCACTCTCTTCATGAACAGGTCGGGGATCCACATGGCGTAG 30847 Query 153960 ATGAGGTCGC--GCGCCTTGCAATCCTCCGCGCCCATGTTGCGTTTCAGATTGAGCACGC 154017 | || || | || | ||| |||||| || |||| ||||| | || | | Sbjct 30848 AAAAGATCTCTGGCTCTCTGC--TCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAGT 30905 Query 154018 TATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGC---TTTC 154074 | | | || ||||||||| || | ||| | ||| | ||| || | | || | Sbjct 30906 CAAACACATCAAAGTGCCAGGGCTCCAGGTACATGGCAAAGGCTCCGGGCCTCTTGTTGC 30965 Query 154075 CGCCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGC 154134 | ||||| ||||| | || | | ||||| | || | || |||||| | || || Sbjct 30966 CACCCTGGTCGACATAACGTGCTGTGTTGTTATAAACTCTCAGCATGGGGACTAGCCCAT 31025 Query 154135 TTGCGGTGCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTA- 154193 | | | ||||||| || | ||| | ||| || || | ||||||| | | Sbjct 31026 TGGAGTTGCCGTTTGTGCCAGCGATGTAGCTCCC-----CGTTGATCTGATGCAGCTGAC 31080 Query 154194 ----ACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAGTCGCCCAGCGTCCTGTA 154249 ||||| || || || | ||| || ||| || || | |||||| || Sbjct 31081 CGCCACGCCGATTCCTCCAGCTGCCTTGGAGATGAGGGCACATTGCTTCAGCGTGTCATA 31140 Query 154250 GATGCCGTCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCGGAAT 154309 ||||| |||||||| ||||| | | |||||| ||| || ||| || || | Sbjct 31141 AATGCCTTCGATGCTGTCGTCTTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCCT 31200 Query 154310 GCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCATCAT 154369 | ||||| || ||||| || || ||||| || ||| || | || || Sbjct 31201 GTTGGTTCCTGCGTTGAAGAGCGTAGGGGAGGCGTGGGTGAACCACTTCTCTGACAACAG 31260 Query 154370 GCGGTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCGCAT 154429 | ||| || |||||||| | |||||||| ||| || || | || || | ||| Sbjct 31261 GTTGTAGGTCTCGATGGCTGCGTCGATATCCGTTTTGTGGATCCCAACAGCCACTCTCAT 31320 Query 154430 GAGCATGTGCTGCGGACGTTCGGCGACT---CTATTGTCAATCTTCAAGAGATA 154480 ||||||||||||||| || ||||| ||| | |||| |||||||| || || Sbjct 31321 GAGCATGTGCTGCGGCCGCTCGGCCACTTTGCCATTG---ATCTTCAACAGGTA 31371 >seq3162 Length=48913 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| |||| || ||| | || | ||| | | | |||||||| || |||||||||||| Sbjct 2587 GCCTCCTCTCAGACGGAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 2528 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || || || || || || || || | | |||| |||||||| ||||| ||||| Sbjct 2527 GAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCTGGAGG 2468 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || || || ||| || ||| | | ||| | |||||| | | ||| || Sbjct 2467 GATGCCCTCCTTATCCTGGATCTTGGCTTTGACATTTTCAATGGTGTCACTGGGCTCAAC 2408 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | || || |||||||| || || |||||||||||||| Sbjct 2407 CTCCAAAGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAAATCTGCAT 2360 >seq6074 Length=24291 Score = 98.7 bits (108), Expect = 1e-15 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || | || ||||| || | ||| | | | |||||||| || ||||||||||| Sbjct 4793 GCCACCCCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 4852 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || || || || || ||||| |||| | |||| || | ||| ||||| || || Sbjct 4853 GAGGGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGG 4912 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| |||||| || | | || | ||||||| | | |||||| Sbjct 4913 AATGCCTTCCTTGTCCTGGATTTTAGCCTTGACATTCTCAATGGTGTCGCTGGGCTCCAC 4972 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 ||| | || | || || ||||| || || || ||||| ||||||||| Sbjct 4973 CTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCATG 5021 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || | || ||||| || | ||| | | | |||||||| || ||||||||||| Sbjct 3731 CCACCCCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 3790 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || || || || || | | |||| || | ||| ||||| || || Sbjct 3791 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGA 3850 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| ||||| |||||| || | | || | ||||||| | | ||| ||| Sbjct 3851 ATGCCTTCCTTGTCCTGGATTTTAGCCTTGACATTCTCAATGGTGTCGCTGGGCTCGACC 3910 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | || | || |||||||| || || || || || ||||||||| Sbjct 3911 TCCAGGGTGATGGTCTTACCAGTGAGGGTCTTGACGAAGATCTGCATG 3958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496149512710560