Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maccullochella_20peelii_20[genbank_20GCA_5F002120245.1_202017-05-09] 18,198 sequences; 633,241,041 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq3162 104 2e-17 seq4239 95.1 1e-14 seq1161 86.0 6e-12 >seq3162 Length=48913 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 ||| | ||| | || ||||| || || || ||||| ||| | ||||| ||| || Sbjct 2569 CACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTC 2510 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 ||||| || ||||| |||||| |||||||| || ||||| ||||||||||| ||| Sbjct 2509 CAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCTGGAGGGATGCCCTCCTTATCCTG 2450 Query 127024 GATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083 ||| || |||| | ||| | |||||| | ||| || || | || | || || Sbjct 2449 GATCTTGGCTTTGACATTTTCAATGGTGTCACTGGGCTCAACCTCCAAAGTGATGGTCTT 2390 Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| ||||| || || |||||||||||||| Sbjct 2389 GCCAGTCAGGGTCTTCACAAAAATCTGCAT 2360 Score = 96.9 bits (106), Expect = 3e-15 Identities = 142/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || ||||| || || ||||| ||| | ||||| ||| || ||||| || ||| Sbjct 2784 GTGGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCA 2725 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||||| |||||||| || ||||| ||||| ||||| ||| ||| || ||| Sbjct 2724 GCAAAGATCAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTATCCTGGATCTTGGCCTTC 2665 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | ||||| | ||| || || | ||| | || ||||| ||||| || Sbjct 2664 ACATTCTCAATAGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTC 2605 Query 127097 TTTACAAAAATCTGCATGGCT 127117 || ||||||||||||||| || Sbjct 2604 TTCACAAAAATCTGCATGCCT 2584 >seq4239 Length=33969 Score = 95.1 bits (104), Expect = 1e-14 Identities = 490/759 (65%), Gaps = 32/759 (4%) Strand=Plus/Plus Query 146044 AGGGCCTTGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGA 146103 ||| | |||| |||| | || || | ||||||||| || | ||| || | | Sbjct 29900 AGGTCTTTGAGCAGATGTGGATTCACGATCTGAAACTCTCCAGAGAGGACCCTGCGGGTG 29959 Query 146104 TACACGTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTA 146163 || | |||||||||| | | || | ||||| ||||| || || ||||| || || | Sbjct 29960 TAGATGTTGCTGGTGTAAGCTTCAATAGACTCATTGTTGCCCAGGATCTGGGCGGTGGAG 30019 Query 146164 GCGGTAGGCATGTACGCCACCAGCAAAGAGTTTCTCACGCCGTGTCTTTG-AATCTTTTC 146222 || || ||||| |||| ||||| | ||| ||||||||||| ||| | |||||| || Sbjct 30020 GCTGTGGGCATCGGGGCCAGCAGCAGACTGTTCCTCACGCCGTG-CTTGGCAATCTTCTC 30078 Query 146223 CC---GTAGTTTGGACCAATTCCACAAATGATCCGTGGGATAGATATTGTAGTTGTCGTA 146279 | | || || | | |||| | | || ||||| | | | ||||||| Sbjct 30079 CTTCAGCAGCTT----CCAGTCCAGCA--GGTCGGTGGGTGTCTTCTCCCACATGTCGTA 30132 Query 146280 ATGCATAGTGCCGCGGAACAGGGGGCTATTCTCGTACGATTCATAAGGACCGTCGATCTT 146339 || | ||||| | | ||| ||||||| ||||| || || | || Sbjct 30133 CTGGAGGATGCCGTTGCTGACGGGAGAGCCTTCGTACGTCTCATAGGGGCCAA-GCTCAG 30191 Query 146340 G-GCCAGTTCGCAGCTAGCTTCCAGAGCCGAAAAGTATATGGTCTCCGCGATCATGTA-G 146397 ||||| |||||||| || ||||| || | |||| |||||||| |||| || | | Sbjct 30192 CCGCCAGCTCGCAGCTTGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATC-TGAATG 30250 Query 146398 TTGACGCTCCTG-GCCTCCTCGCTGTCGTAGGGGATATCG-AGAAGCACAAAGGCGTCGG 146455 || | || ||| ||||| ||| ||| | ||| || || | || | ||||| |||| Sbjct 30251 TTCA-GCAGCTGAGCCTCGGGGCTTTCGAACGGG-TAACGCATGAGGATGAAGGCATCGG 30308 Query 146456 CGAGACCCTGTATCCCGACACCAACGGGGCGGTGTTTCTTGTT--ACTGTTCGCAGCGCC 146513 | | |||||| | |||| || | || | ||| |||||| ||| ||| || | Sbjct 30309 CCAAACCCTGGACACCGATTCCTATTGGCCTGTGACGCTTGTTGGACTTTTCT--GCTTC 30366 Query 146514 CG-CAGTGGGATAGTGGTTGCTGTCGATGATCTTGTTGAGATTACGCACGACAATTTTCG 146572 | || ||| |||| ||| | || || |||||||| | || || | | ||| | Sbjct 30367 AGGCACTGG-ATAGAAGTTAATCTCAATTATCTTGTTTAAGTTTTTGACTATTACTTTGG 30425 Query 146573 TCAAA--CGATTCAGCAGGACATAGTCAAATGTTTTAGTTTTAACGTTGACGCACTTGTT 146630 ||| | || | || | ||||||| || | | | | ||||| || |||| Sbjct 30426 TCACATACGCT--AGTTTCTTAAAGTCAAAAGTCTGC---TCAGGGGTGACGTACATGTT 30480 Query 146631 GACGGCGATAGAGGCCAAGTTACATACGGCAGTCTCGTCCTTGTCGCAATACTGCACAAT 146690 || || || ||||||| ||||| || || ||| || | | | || | | || Sbjct 30481 GAGTGCAATGGAGGCCAGATTACAGACAGCCACCTCATCGTGGCTGGTGTATTCAATGAT 30540 Query 146691 CTCGGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTTACTAAACTTGTT 146750 || | |||||||||||||| ||||||| |||| | ||| | ||||| || | |||| Sbjct 30541 TTCTGTGCAGAGGTTGCTGCTCTTGATGGTGCCTAGATTCTGCTGGTTGCTCTTCCTGTT 30600 Query 146751 GCAGGGGTCCTTGTAGAGCATGTACGGTCCCCCGGTTTC 146789 ||| | ||||||||| |||||||| || |||||||| Sbjct 30601 GCACGCGTCCTTGTACAGCATGTATGGCGTACCGGTTTC 30639 >seq1161 Length=118247 Score = 86.0 bits (94), Expect = 6e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 146680 TACTGCACAATCTCGGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTTA 146739 |||| || ||||| | ||| || |||||| | |||||| |||||| ||| | ||||| Sbjct 53941 TACTCTACGATCTCCGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGGTTG 53882 Query 146740 CTAAACTTGTTGCAGGGGTCCTTGTAGAGCATGTACGGTCCCCCGGTTTC 146789 || | ||||||||| |||||||||||||||||| || |||||||| Sbjct 53881 CTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGCGTACCGGTTTC 53832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475392635455520