Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maccullochella_20peelii_20[genbank_20GCA_5F002120245.1_202017-05-09] 18,198 sequences; 633,241,041 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq4239 96.9 3e-15 seq1161 89.7 5e-13 >seq4239 Length=33969 Score = 96.9 bits (106), Expect = 3e-15 Identities = 124/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 123588 ATTATCGAAACACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAAC 123647 |||||||| | || |||||||| ||||| |||||||| ||||| ||||| |||||| Sbjct 30657 ATTATCGAGTCCCAGACAGAAACCGGTACGCCATACATGCTGTACAAGGACGCGTGCAAC 30598 Query 123648 AGGAAAACCAATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATT 123707 ||||| | ||| ||| || | || || || || | || || || ||| | ||||| Sbjct 30597 AGGAAGAGCAACCAGCAGAATCTAGGCACCATCAAGAGCAGCAACCTCTGCACAGAAATC 30538 Query 123708 ATCGAATACAGCGATGCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGATT 123758 || ||||||| | |||| | ||||| || |||||| |||| || ||| Sbjct 30537 ATTGAATACACCAGCCACGATGAGGTGGCTGTCTGTAATCTGGCCTCCATT 30487 >seq1161 Length=118247 Score = 89.7 bits (98), Expect = 5e-13 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 123606 GAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGC 123665 |||||||| ||||| |||||||||||||| ||||||||||||||||| | ||| ||| Sbjct 53832 GAAACCGGTACGCCATACATGCTCTACAAGGACGCCTGCAACAGGAAGAGCAACCAGCAG 53891 Query 123666 AACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACA 123717 || |||| || || |||| || ||||| ||| | || || | || |||| Sbjct 53892 AATCTGGGCACCATCAAATCCAGCAATCTGTGCACGGAGATCGTAGAGTACA 53943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451900380572080