Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maccullochella_20peelii_20[genbank_20GCA_5F002120245.1_202017-05-09] 18,198 sequences; 633,241,041 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq2426 129 8e-25 seq136 125 1e-23 seq3695 84.2 3e-11 >seq2426 Length=102441 Score = 129 bits (142), Expect = 8e-25 Identities = 182/256 (71%), Gaps = 0/256 (0%) Strand=Plus/Minus Query 8920 GAGGGACTGAATGGTTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCT 8979 |||| ||| | || ||||| || |||||||| || |||||| || ||||| ||||| Sbjct 31293 GAGGCTCTGCAGGGAGGCGGTGTTGACGATGTCAAAGCCTACGATGCCTCCGAATGTGCT 31234 Query 8980 GGGTTTCCAGTACGCCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGG 9039 ||| ||||||||| |||||||||||||| ||| |||| | || || | ||| || || Sbjct 31233 GGGCTTCCAGTACTCCGGGGAGCAGATGGGGTTTCCCATTAAGCCCTTGAGGGAGAAAGG 31174 Query 9040 AGCCCCCAGCTCGATGATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGAT 9099 || |||| ||| | ||| |||| || |||||||| || | ||||| || || | Sbjct 31173 GGCTCCCATCTCCACCATGGTCTCCCCAAAGATGGCGTTAGGCCTGGGTTTCTCCACCAA 31114 Query 9100 GAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGC 9159 | || | |||||| || ||||| |||| || || || | | || | | | ||||| Sbjct 31113 CAGACCCGGGTAGAGCTCCACAGCATCGATGTGTCCGTACATCTCCTCGAGCACTGCAGC 31054 Query 9160 TATCTCCTTCTCACCT 9175 || || ||||| ||| Sbjct 31053 CATTTCTTTCTCTCCT 31038 Score = 109 bits (120), Expect = 8e-19 Identities = 205/293 (70%), Gaps = 10/293 (3%) Strand=Plus/Minus Query 9432 CCGACCGGCAATCTGTCTAGTGAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAG 9491 ||| || || ||||| | || ||||| || || | | | || ||||||| | | Sbjct 30147 CCGCCCAGCGATCTGCTTGGTAAACGACTCCACAAGGTTGCTGATGCCGTGCTCAGTCAC 30088 Query 9492 GATGGAATTGTTGTAAACGAAGTGTTCGTAACCATA---CTTCGCGTCGCCTATGCGAAA 9548 || || ||||| | || || |||| || | || |||| | || |||| |||| Sbjct 30087 TATAGAGGTGTTGAAGACAAACTGTTTATAGCTGTAATCCTTCTCCTCAA-TATG-GAAA 30030 Query 9549 ATCATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTT 9608 | |||||||| ||| | |||||| |||| ||||| |||||||| | || || ||||| Sbjct 30029 GT-ATCAGGCATCAGTGGGTGCCAGTGGTACAGGGTGTTGAACTCAGATGCAATGCGGTT 29971 Query 9609 CTGGTACTGAAAG-GC-GGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGG 9666 ||||||||| ||| || ||| |||||| | ||| |||||||| | |||| |||||| Sbjct 29970 CTGGTACTGGAAGCGCTGGT--TGAACAGCAGCTCGGGGTCAAACTTGAGCTTGAAGTGA 29913 Query 9667 TACCCGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCC 9719 || ||||| || ||||| || || | ||| | ||| || ||||| || || Sbjct 29912 TAGCCGCTCAGGTGCTGCACGTAGTCCTCGATCACAATCTTGATGGTCTCTCC 29860 Score = 86.0 bits (94), Expect = 9e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 9727 ATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGA 9786 || || || ||||| || || | | ||||| |||| || ||||| | | || || Sbjct 29179 ATGAGCCGTGTGGTCTGGAAGAGCCTTTCGTCGTCCCAGTCAGGGTGGACCTCCTTCAGC 29120 Query 9787 ACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGC 9846 ||||| || |||| ||||||||||| ||||| ||||||||||||||||| | || || Sbjct 29119 ACATCACACACCCGGTTGTGTTCTCGTAGCCAGATGGTGGCGTACATCATCAGGCCAGGG 29060 Query 9847 ACTAAACCAAACACTTCATTCCCCACTGCAAAGCG 9881 || | || ||| | || | ||||| || ||||| Sbjct 29059 ACCAGGCCGAACGCCTCGTGGCCCACAGCGAAGCG 29025 >seq136 Length=251970 Score = 125 bits (138), Expect = 1e-23 Identities = 135/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 8963 TCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTCGCCATGAGC 9022 || || || ||||||||||| ||||||||| | |||||||||||| ||| ||| || Sbjct 84853 TCTCCCCCAAAGGTGCTGGGCTTCCAGTACTCAGGGGAGCAGATGGGGTTTCCCAGCAGG 84794 Query 9023 CCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATGGCACCGGGA 9082 ||||||| ||| || ||||| |||| ||| | || |||||||| || || ||| | ||| Sbjct 84793 CCTTTCAGGGAGAAGGGAGCACCCATCTCCACCATACTCTCACCAAATATAGCATCAGGA 84734 Query 9083 CGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCGCCATAGAG 9141 || | ||| || | | || ||| | |||||| || | ||| || | ||| |||||||| Sbjct 84733 CGTGCTTTCTCCAGCAGGACGCCGGGGTAGAGCTCCAAAGCATCTATGTCACCATAGAG 84675 Score = 84.2 bits (92), Expect = 3e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 9724 ATGATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTG 9783 ||||| || | || || || || | |||||| || |||| || ||||| || Sbjct 81125 ATGATGAGTCTGGTAGTCTGGAAAAGCTGCTCATCGTCCCAGGTGGGATGTTCTGCCTTC 81066 Query 9784 AGAACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCC 9843 || ||||| ||||| ||||| || |||||||||||||||||||||||||| | | |||| Sbjct 81065 AGGACATCACAGACTCTGTTATGCTCTCTCAGCCATATGGTGGCGTACATGGTGAGACCC 81006 Query 9844 GGCA 9847 |||| Sbjct 81005 GGCA 81002 >seq3695 Length=53646 Score = 84.2 bits (92), Expect = 3e-11 Identities = 154/226 (68%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 8942 TTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAG 9001 ||||| ||||| | || || | || || ||||||||||| |||||||| | || || Sbjct 45659 TTCACTATGTCATAGCCGACTTTGCCTCCAAAGGTGCTGGGCTTCCAGTAATCTGGAGAA 45600 Query 9002 CAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTC 9061 || || || ||| || ||||| | ||| || || || |||| ||| | |||||| Sbjct 45599 CATATAGGATTTCCCAGCAGGCCTTTAAGGGAGAAGGGGGCACCCATCTCCACCATGCTC 45540 Query 9062 TCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACA 9121 || || || ||||| || || || | | | || | || | ||||| || | ||| | | Sbjct 45539 TCTCCAAATATGGCCCCTGGTCGTGTTCTCTCCAACATCAGGCCAGGATAAAATTCAAGA 45480 Query 9122 GCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCT 9167 || || | ||| || || | | || | |||| |||||||||| Sbjct 45479 GCATCAATGTCACCGTACATCTCCTCAAGCTCGCGTGCTATCTCCT 45434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723563369973200