Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maccullochella_20peelii_20[genbank_20GCA_5F002120245.1_202017-05-09] 18,198 sequences; 633,241,041 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq4239 212 8e-50 seq1161 98.7 1e-15 seq7404 93.3 5e-14 >seq4239 Length=33969 Score = 212 bits (234), Expect = 8e-50 Identities = 848/1313 (65%), Gaps = 58/1313 (4%) Strand=Plus/Plus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 ||||||||| | ||||| | |||| |||||||||| |||| ||| ||||| |||||| Sbjct 29960 TAGATGTTGCTGGTGTAAGCTTCAATAGACTCATTGTTGCCCAGGATCTGGGCGGTGGAG 30019 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCC 116022 ||||||||||| || |||| || || ||||| | | || | ||| ||| Sbjct 30020 GCTGTGGGCATCGGGGCCAGCAGCAGACTGTTCCTCACGCCGTGCTTGGCAATCTTCTCC 30079 Query 116023 TTGAGGGCGTCCCAGTC------GTAGTTGAGCTTTGTCTCCCCCTCCCACATATCAAAC 116076 || || | |||||| || | || | ||||| | |||||||| || || Sbjct 30080 TTCAGCAGCTTCCAGTCCAGCAGGTCGGTGGG---TGTCTTC---TCCCACATGTCGTAC 30133 Query 116077 TGGAGGATACCTTGG--GACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCT 116134 |||||||| || | | |||| || || || || | |||||||| ||||| || || Sbjct 30134 TGGAGGATGCCGTTGCTGACG--GGAGAGCCTTCGTACGTCTCATAGGGGCC---AAGCT 30188 Query 116135 C---CGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAG 116191 | ||||| ||| |||| ||||| ||||| |||| || || |||||||| || || Sbjct 30189 CAGCCGCCAGCTCGCAGCTTGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATCTGAA 30248 Query 116192 CATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCG 116251 |||| || |||||| | || |||| | ||| | || || |||| | Sbjct 30249 TGTTCAGCAGCTGAGCCTCGGGGCTTTCGAACGGGTAACGCATGAGGATGAAGGCATCGG 30308 Query 116252 CGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCT 116311 | | ||| |||||||||| || ||||| | || | | | || |||||| || Sbjct 30309 CCAAACCCTGGACACCGATTCCTATTGGCCTGTGACGCTTGTTGGACTTTTCTGCTTCAG 30368 Query 116312 CCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGA 116371 ||| ||||| || || | || || | | | |||| |||||| | || || || | Sbjct 30369 GCACTGGATAGAAGTTAATCTCAATTATCTTGTTTAAGTTTTTGACTATTACTTTGGTCA 30428 Query 116372 TTTCATGAAGCT--TTTCGTAA--TCAAAACTGCGAGTCTCTTCAT---TGACATACTTA 116424 ||| | ||| |||| ||| |||||| |||| ||| |||| ||| | Sbjct 30429 ---CAT-ACGCTAGTTTCTTAAAGTCAAAA------GTCTGCTCAGGGGTGACGTACATG 30478 Query 116425 GGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATA 116484 || || || || ||||||||||| |||| |||||| | ||||| || || Sbjct 30479 TTGAGTGCAATGGAGGCCAGATTACAGACAGCCACCTCATCGTGGCTGGTGTATTCAATG 30538 Query 116485 ATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTG 116544 ||||| || || | || ||||| |||||||| | |||| || || ||| || Sbjct 30539 ATTTCTGTGCAGAGGTTGCTGCTCTTGATGGTGCCTAGATTCTGCTGGTTGCTCTTCCTG 30598 Query 116545 TTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATA 116604 || ||||| |||||||| ||||| |||||||| || || || || ||||||| || ||| Sbjct 30599 TTGCACGCGTCCTTGTACAGCATGTATGGCGTACCGGTTTCTGTCTGGGACTCGATAATG 30658 Query 116605 GCCTTCCATA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTT 116663 || | ||| | | | | | || ||| | ||| | | |||||||| ||| || | Sbjct 30659 GCGTGCCACAGCTGCTGAGCCT-TCACCAAGCGCTTGACCCTCCCCTCCTTCTCATATGT 30717 Query 116664 TGTGTAGAGGGCCTCAAACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTGCCTTATCTG 116722 || ||||| ||||||||| || ||| |||| ||| ||||| || || | || Sbjct 30718 GGTATAGAGCTTCTCAAACTCCTC-CCCCCAGCACTCGTCCAGCCCCGGGCACTCACTTG 30776 Query 116723 GACAGAAGAGAGACCA---TTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGA 116779 |||| | |||||||| ||| | ||| || | ||||||||| ||||| |||| Sbjct 30777 GACACATCAGAGACCAGTCTTGGTTGCTTTCC---ACTCTCTTCATGAACAGGTCGGGGA 30833 Query 116780 TCCAGAGCGCCGAGAAGAGATC-CCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGC 116838 |||| | || |||| ||||| | | | ||| || | | || || || | Sbjct 30834 TCCACATGGCGTAGAAAAGATCTCTGGCTCTCTGCTCCTCCTTTCCTGTG-TTCTTCTTC 30892 Query 116839 AACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCC 116898 | ||||| ||||| | | ||| |||||| || |||||||||| || | | | || Sbjct 30893 AGCTCCAGGAAGTCAAACACATCAAAGTGCCAGGGCTCCAGGTACATGGC-AAAGGCTCC 30951 Query 116899 TTGCGAC----GACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCAT 116954 || | ||| |||||| ||||| | || || |||| | || | ||||| Sbjct 30952 GGGCCTCTTGTTGCCACCCTGGTCGACATAACGTGCTGTGTTGTTATAAACTCTCAGCAT 31011 Query 116955 TGGAATGATACCATCAGATTGGCCATTTGT-CCCCCGAATACGAGACTTGTTGGCTCTGA 117013 || | | |||| || | ||| ||||| || ||| | | ||| | ||||| Sbjct 31012 GGGGACTAGCCCATTGGAGTTGCCGTTTGTGCCAGCGATGTAGCTCCCCGTT-GATCTGA 31070 Query 117014 CATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGA 117073 | || || || || || || || ||| ||||| | || || | | | | Sbjct 31071 TGCAGCTGACCGCCACGCCGATTCCTCCAGCTGCCTTGGAGATGAGGGCACATTGCTTCA 31130 Query 117074 GACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACA 117133 | || | || || || ||||| ||| | || | |||| ||||||||||| |||| Sbjct 31131 GCGTGTCATAAATGCCTTCGATGCTGTCGTCTTTCATGGCGAGCAGGAAGCAGCTGGACA 31190 Query 117134 TTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAAC 117186 |||||||| || || ||||||||||| || || | |||||| ||||| Sbjct 31191 GCTGTGGCCTGTTGGTTCCTGCGTTGAAGAGCGTAGGGGAGGCGTGGGTGAAC 31243 >seq1161 Length=118247 Score = 98.7 bits (108), Expect = 1e-15 Identities = 77/92 (84%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 ||||||||| | ||||| | ||||| | |||||||||| |||| ||| ||||| ||||| Sbjct 54906 TAGATGTTGCTGGTGTAGGCCTCAATGGACTCATTGTTGCCCAGGATCTGGGCAGTGGAA 54847 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 115994 |||||||||||||| |||| ||| || ||||| Sbjct 54846 GCTGTGGGCATGGGGGCCAAGAGCAGACTGTT 54815 >seq7404 Length=21843 Score = 93.3 bits (102), Expect = 5e-14 Identities = 86/109 (79%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 127539 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 127598 ||||||| | | |||||| || || |||||| ||| || ||||| || || | ||||| Sbjct 16232 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 16173 Query 127599 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 127647 ||| |||||| |||||| || || |||||||||||||| |||||||| Sbjct 16172 TCAGCCAGAAGATCGCAGCGAAGGAACCAGAGAAGAAGATTCCCTCCAC 16124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613367642449680