Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maccullochella_20peelii_20[genbank_20GCA_5F002120245.1_202017-05-09] 18,198 sequences; 633,241,041 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq4239 158 2e-33 seq1161 89.7 8e-13 >seq4239 Length=33969 Score = 158 bits (174), Expect = 2e-33 Identities = 344/512 (67%), Gaps = 5/512 (1%) Strand=Plus/Plus Query 204100 CCTGA-TCGAGCCGTTGTCGGCCATCAGTCTCATCCTCGTCTCCTCCCCCCACATGCCCA 204158 ||||| | || ||||| | || ||||| || || ||||||| | ||||| ||| Sbjct 29832 CCTGAATGGACCCGTTATGAGCGATCAGCTGGTTCTTCATCTCCTCGCTCCACAGCCCCC 29891 Query 204159 ACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGATCTGAAAGTCTCCGGACAGCACCC 204218 | |||| || | ||| || || || | ||||||||| ||||| || || |||| Sbjct 29892 TCTCCGTCAGGTCTTTGAGCAGATGTGGATTCACGATCTGAAACTCTCCAGAGAGGACCC 29951 Query 204219 CTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCTCGTTGTTGCCGAAAATCTGAG 204278 |||||| | | |||| ||||| | | ||| | | ||| |||||||| | ||||| | Sbjct 29952 TGCGGGTGTAGATGTTGCTGGTGTAAGCTTCAATAGACTCATTGTTGCCCAGGATCTGGG 30011 Query 204279 CGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGTTGCGCACACCGTATTTTTGGA 204338 ||||| ||| |||||||| || ||||| ||||| ||| | ||| |||| || | Sbjct 30012 CGGTGGAGGCTGTGGGCATCGGGGCCAGCAGCAGACTGTTCCTCACGCCGTGCTTGGCAA 30071 Query 204339 CCCTGCGCTTCAGAGAGGTCCAGTCGTGCATCGCACTGGGTTTCACGCCCCACATGTCGA 204398 | | |||||| ||||||| ||| | ||||| || ||||||||||| Sbjct 30072 TCTTCTCCTTCAGCAGCTTCCAGTCCAGCAGGTCGGTGGGTGTCTTCTCCCACATGTCGT 30131 Query 204399 ACTGAAAGATGCCTTGACTGACTGGGCTGCCCTTGTACGTCGGATAAGGCTGATCCTCTT 204458 |||| | |||||| | ||||| || ||| | ||||||| ||| || | ||| Sbjct 30132 ACTGGAGGATGCCGTTGCTGACGGGAGAGCCTTCGTACGTCTCATAGGGGCCAAGCTCAG 30191 Query 204459 CTGCCAGCTTGCACGAGGCGGCCATGGCGTGATAGTACATGGTCTCAAAGATCTGAACGT 204518 | ||||||| ||| || ||| |||| ||||| ||||||||||||||||||| || Sbjct 30192 CCGCCAGCTCGCAGCTTGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATCTGAATGT 30251 Query 204519 TTA--ATCTGGCGGCCTCCGTTCCGTCAAACGCCAGACCCAGCATGGCAAACACGTCCGC 204576 | | | ||| ||||| | | || |||| || || | | || | || || Sbjct 30252 TCAGCAGCTG--AGCCTCGGGGCTTTCGAACGGGTAACGCATGAGGATGAAGGCATCGGC 30309 Query 204577 CAAGCCCTGCACTCCGATTCCCAACGGTCTGT 204608 ||| ||||| || |||||||| | || |||| Sbjct 30310 CAAACCCTGGACACCGATTCCTATTGGCCTGT 30341 Score = 158 bits (174), Expect = 2e-33 Identities = 490/746 (66%), Gaps = 22/746 (3%) Strand=Plus/Plus Query 204889 GATCTCGGTGCACAAGTTACCGCACTTCACCACCCCCACATGCTGCTGGTTAGACTTGCG 204948 ||| || ||||| | ||| | || ||| | || | || ||||||||| ||| | Sbjct 30538 GATTTCTGTGCAGAGGTTGCTGCTCTTGATGGTGCCTAGATTCTGCTGGTTGCTCTTCCT 30597 Query 204949 GTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTTCTCCATCTGAGA-TCGCAGAA 205007 ||| || | ||||||||||| |||| | ||| | ||| | || |||| || ||| | || Sbjct 30598 GTTGCACGCGTCCTTGTACAGCATGTATGGCGTACCGGTTTCTGTCTGGGACTCG-ATAA 30656 Query 205008 TGTGGGTCCACAATTCGCGAGCCTCCACTT---GCTTCACGTACATCCCTTGAGACTCGT 205064 || | ||||| | |||||| ||| |||| || | |||| | ||| | Sbjct 30657 TGGCGTGCCACAGCTGCTGAGCCTTCACCAAGCGCTTGAC---CCTCCCCTCCTTCTCAT 30713 Query 205065 ATTTTGTGTACAGCGCCACAAAGTCAGAACC---GTACACGTCCATCAGCCCTGGACATT 205121 || | || || ||| | |||| || || | || |||||| |||| || || | Sbjct 30714 ATGTGGTATAGAGCTTCTCAAACTCCTCCCCCCAGCACTCGTCCA---GCCCCGGGCACT 30770 Query 205122 TTTTGGGACACATCAGAGACCACATCTGATCGTCTTTCACCCTCTCCATAAACAGGTCGC 205181 | ||||||||||||||||| || | | || ||| |||| ||| ||||||||| Sbjct 30771 CACTTGGACACATCAGAGACCAGTCTTGGTTGCTTTCCACTCTCTTCATGAACAGGTCGG 30830 Query 205182 TGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTTCTTTT 205241 |||||||| | |||| || ||||| | ||| || | || | ||| |||||| | Sbjct 30831 GGATCCACATGGCGTAGAAAAGATCTCTGGCTCTCTGCTCCTCCTTTCCTGTGTTCTTCT 30890 Query 205242 TCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTAACCACACGGCCATTGCG 205300 ||| ||||| ||| | | | || |||||| ||||| | ||| ||| | || Sbjct 30891 TCAGCTCCAG-GAAGTCAAACACATCAAAGTGCCAGGGCTCCAGGTACATGGCAAAGGCT 30949 Query 205301 CCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTCGCAGC 205360 || ||||||||||| ||||||||||| || || | | ||| |||||| |||| Sbjct 30950 CCGGGCCTCTTGTTGCCACCCTGGTCGACATAACGTGCTGTGTTGTTATAAACTCTCAGC 31009 Query 205361 ATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATG--GCCGAGCCTTCAGCCC 205418 || || || || || |||| | | ||||| |||| |||| || | || | | Sbjct 31010 ATGGGGACTAGCCCATTGGAGTTGCCGTTTGTGCCAGCGATGTAGCTCCCCGTT--GATC 31067 Query 205419 TCACGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACTTGGCGATCTGGGCGCACTCTT 205478 | | | | || ||| |||| || || |||| ||||| ||| |||| || | | Sbjct 31068 TGATGCAGCTGACCGCCACGCCGATTCCTCCAGCTGCCTTGGAGATGAGGGCACATTGCT 31127 Query 205479 GCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTCACCAGATAGCACGAAG 205538 ||| ||| || |||||| ||||| ||||| || | | ||| |||| | Sbjct 31128 TCAGCGTGTCATAAATGCCTTCGATGCTGTCGTCTTTCATGGCGAGCAGGAAGCAGCTGG 31187 Query 205539 CCAGCT-TGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTGGGGCTGGCGTGGCTGAAGCGC 205597 ||||| |||| |||||| || |||| ||||||||| ||| ||||||| |||| | | Sbjct 31188 ACAGCTGTGGC-CTGTTGGTTCCTGCGTTGAAGAGCGTAGGGGAGGCGTGGGTGAACCAC 31246 Query 205598 TTCTCGCTCAAACACCTGTAGGTCTC 205623 ||||| ||| |||||||||| Sbjct 31247 TTCTCTGACAACAGGTTGTAGGTCTC 31272 Score = 114 bits (126), Expect = 2e-20 Identities = 114/145 (79%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 203917 CCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGTGAATGTT 203976 ||| ||||| | ||||||| | |||||||| ||| || || || ||||| ||||| Sbjct 29040 CCAGCCGTAGAAGTGCATGCTGGTCAGTTTGCCGTAGTTCGGCTCAGCAATGTGGATGTT 29099 Query 203977 CAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCATATTGATAATGGTCT 204035 ||| |||||||| ||||||||| ||||| || || || |||||||| |||| ||||||| Sbjct 29100 CAGGGACTGGCTCTGGTCGATG-AAGGCACCGCGGTCGGCGGCCATCTTGAGTATGGTCT 29158 Query 204036 TCTGCGAAATCTCCCACACCGTCTT 204060 |||| || || |||||||| || || Sbjct 29159 TCTGGGAGATTTCCCACACGGTTTT 29183 >seq1161 Length=118247 Score = 89.7 bits (98), Expect = 8e-13 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 204189 TGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTT 204248 || ||| |||||| ||||| || ||||||| |||||| | | |||| ||||| | | | Sbjct 54944 TGCTGACCTGAAACTCTCCTGAGAGCACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCCT 54885 Query 204249 CGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGA 204308 | | | ||| |||||||| | ||||| || ||| || ||||||||||| |||| || Sbjct 54884 CAATGGACTCATTGTTGCCCAGGATCTGGGCAGTGGAAGCTGTGGGCATGGGGGCCAAGA 54825 Query 204309 GCAGGGAGTTGCGCACACC 204327 |||| ||| | |||||| Sbjct 54824 GCAGACTGTTCCTCACACC 54806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794974322070880