Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maccullochella_20peelii_20[genbank_20GCA_5F002120245.1_202017-05-09] 18,198 sequences; 633,241,041 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq3162 138 3e-27 seq6074 127 5e-24 seq356 107 5e-18 >seq3162 Length=48913 Score = 138 bits (152), Expect = 3e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| |||||||| || |||||||| |||| ||||||||| | | || | |||||| Sbjct 3027 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCT 2968 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| || || ||||| |||||||||||||| ||| || ||||| ||| Sbjct 2967 TCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTATCC 2908 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||||||| || | ||||| ||| || || |||| ||||| ||| Sbjct 2907 TGGATCTTGGCCTTCACGTTCTCAATAGTGTCACTTGGCTCAACCTCCAGGGTGATGGTC 2848 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || ||||| || || || Sbjct 2847 TTGCCAGTCAGGGTCTTCACGAAGATCTG 2819 Score = 134 bits (148), Expect = 3e-26 Identities = 161/218 (74%), Gaps = 3/218 (1%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || ||||| ||||| || |||||||| |||| ||||||||| | | || | |||||| Sbjct 2571 AGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCT 2512 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| || || ||||| |||||||||||||| ||| || || || ||| Sbjct 2511 TCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCTGGAGGGATGCCCTCCTTATCC 2452 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| || || ||| | |||||| | | || || ||||| ||||| ||| Sbjct 2451 TGGATCTTGGCTTTGACATTTTCAATGGTGTCACTGGGCTCAACCTCCAAAGTGATGGTC 2392 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 || || || || || ||||||||||| || |||||| Sbjct 2391 TTGCCAGTCAGGGTCTTCACAAAAATCTG---CATTTT 2357 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| |||||||| || || || || |||| ||||||||| | | || | |||||| Sbjct 2799 AGGACCAGGTGGAGTGTGGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCT 2740 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| || || ||||| |||||||||||||| ||| || ||||| ||| Sbjct 2739 TCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTATCC 2680 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| |||||| || | ||||| | | || || |||| ||||| ||| Sbjct 2679 TGGATCTTGGCCTTCACATTCTCAATAGTGTCACTGGGCTCAACCTCCAGGGTGATGGTC 2620 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || ||||||||||| || Sbjct 2619 TTGCCAGTCAGGGTCTTCACAAAAATCTG 2591 >seq6074 Length=24291 Score = 127 bits (140), Expect = 5e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||||||||| ||||| || |||||||| |||| ||||||||||| | || | ||||| Sbjct 3745 CAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATC 3804 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || || ||||| || | ||||||||| || ||| ||||| || Sbjct 3805 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTC 3864 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| || || ||| || || | |||||| | | || || |||| ||||| || Sbjct 3865 CTGGATTTTAGCCTTGACATTCTCAATGGTGTCGCTGGGCTCGACCTCCAGGGTGATGGT 3924 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||||| ||||| || || || || || || Sbjct 3925 CTTACCAGTGAGGGTCTTGACGAAGATCTG 3954 Score = 127 bits (140), Expect = 5e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||||||||| ||||| || |||||||| |||| ||||||||||| | || | ||||| Sbjct 4580 CAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATC 4639 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || || ||||| || | ||||||||| || ||| ||||| || Sbjct 4640 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTC 4699 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| || || ||| || || | |||||| | | || || |||| ||||| || Sbjct 4700 CTGGATTTTAGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGT 4759 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || ||||| || || ||||| || || Sbjct 4760 CTTGCCAGTGAGGGTCTTGACAAAGATCTG 4789 Score = 127 bits (140), Expect = 5e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||||||||| ||||| || |||||||| |||| ||||||||||| | || | ||||| Sbjct 4808 CAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATC 4867 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 ||||||||| || ||||| ||||| || | ||||||||| || ||| ||||| || Sbjct 4868 TTCCAGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTC 4927 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| || || ||| || || | |||||| | | || || |||| ||||| || Sbjct 4928 CTGGATTTTAGCCTTGACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGT 4987 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || ||||| || || ||||| || || Sbjct 4988 CTTGCCAGTGAGGGTCTTGACAAAGATCTG 5017 Score = 102 bits (112), Expect = 2e-16 Identities = 91/114 (80%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||||||||| ||||| || |||||||| |||| ||||||||||| | || | ||||| Sbjct 3973 CAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATC 4032 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTC 199530 |||||||||||| || || ||||| || | ||||||||| || ||| ||||| Sbjct 4033 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTC 4086 >seq356 Length=191405 Score = 107 bits (118), Expect = 5e-18 Identities = 92/114 (81%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||||||||| ||||| || |||||||| |||| ||||||||||| | || | ||||| Sbjct 11436 CAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATC 11377 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTC 199530 |||||||||||| ||||| ||||| || | ||||||||| || ||| ||||| Sbjct 11376 TTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTC 11323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178646720429266