Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maccullochella_20peelii_20[genbank_20GCA_5F002120245.1_202017-05-09] 18,198 sequences; 633,241,041 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq6074 149 6e-31 seq3162 138 1e-27 seq356 120 3e-22 seq7404 116 4e-21 >seq6074 Length=24291 Score = 149 bits (164), Expect = 6e-31 Identities = 172/232 (74%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||| ||||| || || || || || ||||| ||||| ||||||||| | || || ||| | Sbjct 5024 AAACATGCAGATCTTTGTCAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTGGAGCC 4965 Query 38300 CACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 || ||||| | | | | | || | ||||||| ||||| || || |||||| | || Sbjct 4964 CAGCGACACCATTGAGAATGTCAAGGCTAAAATCCAGGACAAGGAAGGCATTCCCCCAGA 4905 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||| |||| || | || |||||||||||||| || | ||||||||| ||||| Sbjct 4904 CCAGCAGAGGCTGATCTTTGCCGGCAAACAGCTGGAAGATGGCCGCACCCTCTCTGACTA 4845 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||||| ||||| | || || ||| | || |||||| |||| || ||| Sbjct 4844 CAACATCCAGAAGGAGTCCACCCTCCATCTTGTCCTGCGTCTGAGGGGTGGC 4793 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| || || ||||||||| | || |||||| ||| | Sbjct 3957 ATGCAGATCTTCGTCAAGACCCTCACTGGTAAGACCATCACCCTGGAGGTCGAGCCCAGC 3898 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | ||||||| ||||| || || |||||| | ||||| Sbjct 3897 GACACCATTGAGAATGTCAAGGCTAAAATCCAGGACAAGGAAGGCATTCCCCCAGACCAG 3838 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || ||||| |||||||| || | ||||||||| ||||||||| Sbjct 3837 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTACAAC 3778 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| ||||| | || || ||| | || |||||| |||| || || Sbjct 3777 ATCCAGAAGGAGTCCACCCTCCATCTTGTCCTGCGTCTGAGGGGTGG 3731 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || ||||| ||||| ||||||||| | || |||||| ||| Sbjct 4792 ATGCAGATCTTTGTCAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTCGAGCCCAGT 4733 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | ||||||| ||||| || || |||||| | ||||| Sbjct 4732 GACACCATTGAGAATGTCAAGGCTAAAATCCAGGACAAGGAAGGCATTCCCCCAGACCAG 4673 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || ||||| |||||||| || | ||||||||| ||||||||| Sbjct 4672 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTACAAC 4613 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| ||||| | || || ||| | || |||||| |||| || || Sbjct 4612 ATCCAGAAGGAGTCCACCCTCCATCTTGTCCTGCGTCTGAGGGGTGG 4566 Score = 102 bits (112), Expect = 8e-17 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 38331 ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAG 38390 |||| ||||| || || |||||| | ||||| ||| |||| || | || ||||| ||| Sbjct 4098 ATCCAGGACAAGGAAGGCATTCCCCCAGACCAGCAGAGGCTGATCTTTGCTGGCAAGCAG 4039 Query 38391 CTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTG 38450 ||||| || | ||||||||| |||||||||||||| ||||| | || || ||| | Sbjct 4038 CTGGAAGATGGCCGCACCCTCTCTGACTACAACATCCAGAAGGAGTCCACCCTCCATCTT 3979 Query 38451 GTGCTGCGTTTGAGAGGCGGC 38471 || |||||| |||| || ||| Sbjct 3978 GTCCTGCGTCTGAGGGGTGGC 3958 >seq3162 Length=48913 Score = 138 bits (152), Expect = 1e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 |||||||| || || || || || || || ||||| |||||||| | || || ||| || Sbjct 2357 AAAATGCAGATTTTTGTGAAGACCCTGACTGGCAAGACCATCACTTTGGAGGTTGAGCCC 2416 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | | ||| | |||| || |||| || || ||||| || || | ||| Sbjct 2417 AGTGACACCATTGAAAATGTCAAAGCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGAC 2476 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||||| || || | || ||||| |||||||| || | ||||||||| ||||||| Sbjct 2477 CAGCAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTAC 2536 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||| ||||| | || || ||| | ||||| ||| ||||||| ||| Sbjct 2537 AACATCCAGAAGGAGTCCACCCTCCATCTTGTGCTCCGTCTGAGAGGAGGC 2587 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||| ||||||||| | || || ||| ||| Sbjct 2588 ATGCAGATTTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTTGAGCCCAGT 2647 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | || | || |||| || || || || || || | ||||| Sbjct 2648 GACACTATTGAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTCCAGACCAG 2707 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | || ||||| |||||||| || | ||||||||| |||||||||| Sbjct 2708 CAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAAC 2767 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| || ||| | || || || |||| || ||| |||| || ||| Sbjct 2768 ATCCAGAAAGAATCCACACTCCACCTGGTCCTCCGTCTGAGGGGAGGC 2815 Score = 105 bits (116), Expect = 7e-18 Identities = 155/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| ||||||||| | || || ||| | | Sbjct 2816 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTTGAGCCAAGT 2875 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || | || |||| || || || || || || | ||||| Sbjct 2876 GACACTATTGAGAACG-TGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTCCAGACCA 2934 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | || ||||| |||||||| || | ||||||||| ||||||||| Sbjct 2935 GCAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAA 2994 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| ||||| | || || || |||| || ||| Sbjct 2995 CATCCAGAAGGAGTCCACCCTCCACCTGGTCCTCCGT 3031 >seq356 Length=191405 Score = 120 bits (132), Expect = 3e-22 Identities = 139/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 38283 ACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAA 38342 ||| || | |||||| ||| ||||| | | | | |||| | ||||||| ||||| Sbjct 11263 ACCCTCAANGTCGAGCCCAGCGACACCATTGAGAATGTTAAGGCTAAAATCCAGGACAAG 11322 Query 38343 GAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAG 38402 || || |||||| | ||||| ||| |||| || | || ||||| |||||||| || | Sbjct 11323 GAAGGCATTCCCCCAGACCAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGC 11382 Query 38403 CGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTG 38462 ||||||||| |||||||||||||| ||||| | || || ||| | || |||||| || Sbjct 11383 CGCACCCTCTCTGACTACAACATCCAGAAGGAGTCCACCCTCCATCTTGTCCTGCGTCTG 11442 Query 38463 AGAGGCGG 38470 || ||||| Sbjct 11443 AGGGGCGG 11450 >seq7404 Length=21843 Score = 116 bits (128), Expect = 4e-21 Identities = 102/126 (81%), Gaps = 1/126 (1%) Strand=Plus/Minus Query 133274 GCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCT 133333 |||| |||||||| ||||||||||||||||||||||||||||| || |||| |||||| Sbjct 15198 GCTC-ACCAGATTCTCGTTGACGATGCCGTCGCTGGCGGCGAAGAACGCCAACACGTGAG 15140 Query 133334 TGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGT 133393 |||||| | | ||| | ||| |||| | |||||||| || |||||||||||| | Sbjct 15139 AGATGAAGTACCTCTCCTCGTCCTTCAGGGCCTCCCAGTGCTGCAGGTCCTTGGACAGAT 15080 Query 133394 CCACCT 133399 |||||| Sbjct 15079 CCACCT 15074 Score = 95.1 bits (104), Expect = 1e-14 Identities = 90/115 (78%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 |||||||| ||||||| ||||| || ||||| | ||||||||||||||| || || Sbjct 15797 GTAGGTGTTGATGAGGAGGCTGTACATCTCTGAGTGGATGTTCTCCATGGCGATCTGGAA 15738 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACC 133281 ||||| || |||| ||||| |||||||||||| |||| ||| ||||| ||| Sbjct 15737 ACCGTAGAAACACCTGGCCTCCGTCACCTGCACTTCCTGAGTGAAGCGCTCCACC 15683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500059023192320