Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maccullochella_20peelii_20[genbank_20GCA_5F002120245.1_202017-05-09] 18,198 sequences; 633,241,041 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq2667 199 3e-45 seq2860 116 3e-20 seq1043 102 6e-16 seq290 89.7 4e-12 >seq2667 Length=57246 Score = 199 bits (220), Expect = 3e-45 Identities = 932/1463 (64%), Gaps = 20/1463 (1%) Strand=Plus/Plus Query 517259 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 517318 |||| |||||| ||||| ||||||||||| | || || || || || | || || || Sbjct 19304 GCAGACACATTCAGAATGCCATTGGCATCGATGTCGAAAGTTACCTCCACCTGTGGTACA 19363 Query 517319 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 517378 |||| ||||||| ||||| ||| | | ||| ||||||| || || || || Sbjct 19364 CCTCGGGGAGCAGGAGGGATACCTGTGAGCTCAAACTTTCCCAGGAGGTTGTTGTCCTTG 19423 Query 517379 GTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAA 517438 || | || |||||||| | | || || || ||| || ||||| ||||| Sbjct 19424 GTCATGGCTCTCTCACCCTCATACACCTGAATCAGCACACCAGGCTGGTTATCCGAATAT 19483 Query 517439 GTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGT 517497 || | || | ||||| | | || || || || || |||| | || | | || Sbjct 19484 GTGGAGAAGA-TCTGGGTCTGCTTGTTGGGGATGGTGGTATTTCGTTTGATTAGAGGCGT 19542 Query 517498 CATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAAT 517557 ||||| |||||||| || || | || ||||| || |||| || || | || | | Sbjct 19543 CATAACTCCACCTGCAGTCTCAATGCCCAGAGACAGGGGAGCCACGTCCAGCAGCAGCAG 19602 Query 517558 ATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATA 517617 || ||| | ||||| ||| | ||| | || ||||| || || | || ||||| || Sbjct 19603 ATCTTGGACGTTTTCTGAAGTGTCACCCATGAGGATAGCAGCCTGGACTGCTGCACCGTA 19662 Query 517618 TGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAAT-TTG 517676 || ||||||||||| || || | | | || |||| | | ||||| ||||| | || Sbjct 19663 GGCCACAGCTTCATCTGGGTTGATGCTCTTGTTCAGTTCTCTGCCATTAAAAAAGTCCTG 19722 Query 517677 AAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCA 517736 |||| || | | || ||||| | | || || ||||| | || || ||||| | Sbjct 19723 CAAGAGCTTCT-GGATTTTGGGAATTCTTGTGGAGCCACCAACCAGGACGATATCATGGA 19781 Query 517737 CCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTC 517796 || || |||||||| || | ||| | | || ||||| ||||| || ||| Sbjct 19782 TCTTGGACTTATCCAGCTTGGCATCTTGCAGGGCCTTCTCAACTGGTTCCAGTGTTCCTC 19841 Query 517797 TAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TC 517854 | || | || || | || || || || || || || || | || || || Sbjct 19842 TGAAGAGCTCAGAGTTTAACTCCTCAAAGCGTGCCCTTGT--GATGGATGTGTAGAAGTC 19899 Query 517855 AATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACG 517914 ||| || || |||| ||| || | ||||| ||| || || || || || | | Sbjct 19900 AATGCCCTCAAACAGAGAGTCGATCTCAATGCTAGCCTGGGTGCTGGAGGACAGGGTCCT 19959 Query 517915 TTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGA--TTGATTCAAA 517972 || || | ||||| ||||| | ||||| | | ||| | || | ||| | | Sbjct 19960 CTTCGCTCTCTCACAAGCTGTACGCAGTCTCCTCACTGCTCT--CTTATTTTGGCTGATG 20017 Query 517973 TCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAA 518032 || | || | |||||| || || || || ||| | | || | || || ||||| Sbjct 20018 TCCTTCTTGTGTTTTCTTTTAAATTCCTCTACAAAGTGGTTGACCATCCGGTTGTCAAAG 20077 Query 518033 TCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCA 518092 || || || || | | || | ||||| || | | | || | || | || || ||| Sbjct 20078 TCCTCCCCACCAAGGTGTGTGTCTCCTGCGGTGGATTTCACCTCAAAGATGCCGTCCTCA 20137 Query 518093 AGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATT 518152 | | || || | || ||| ||| || ||||| | |||||| || || ||||| Sbjct 20138 ATGGTCAGAATGGACACGTCAAAGGTGCCTCCACCGAGATCAAAGATGAGCACATTGCGC 20197 Query 518153 TCTTTGTCTTGGTT---TTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTA 518209 || | |||| || |||||| || ||||| || | || || || || || || || Sbjct 20198 TC-TCCTCTT--TTACCTTTATCCAGGCCATAGGCTATGGCTGCTGCTGTGGGCTCGTTG 20254 Query 518210 ATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGT 518269 || || |||| ||||| || |||| || || || || || |||||||| || || Sbjct 20255 ATGATCCTCAGGACATTCAGTCCAGAGATCACCCCGGCGTCCTTGGTGGCTTGCCTCTGA 20314 Query 518270 GAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTA-CTTCTTTACCAATATA 518328 || || || ||||| || ||||| || || || |||| | | | ||| | || | || Sbjct 20315 GAGTCATTGAAATAAGCTGGAACTGTGATGACTGCATTTGACACCCTCTGT-CCCAGGTA 20373 Query 518329 AGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATA 518388 || || | | ||||||||| | | ||| || || |||| |||||| | | Sbjct 20374 GGCCTCAGCGATCTCCTTCATTTTAACCAGGACCATGGAGGAGATTTCCTCTGGGTAGAA 20433 Query 518389 TTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAAC 518448 ||||| || || ||| || | | | || || | || | || || Sbjct 20434 GGCCTTGGTCTCCCCTTTATACTCCACCTGGACTTTGGGCTTTCCATTGTCACTGATCAC 20493 Query 518449 TTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAAT 518508 || || |||||| |||||| || || || ||| | || ||||| | ||| ||||| Sbjct 20494 CTTGAAAGGCCAGAGTTTCATGTCGGACTGGACAATGGCATCGTTAAACTTTCTCCCAAT 20553 Query 518509 TAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGC 518568 || ||||| |||||||| || || ||||| || || || ||| | || | ||||| | Sbjct 20554 TAGCCGTTTGGCATCAAAGATTGTGTTGGTGGGGTTCATAGCAACCTGGTTCTTGGCACC 20613 Query 518569 ATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACC 518628 ||||||||| || ||||| || ||||| | ||||| ||||| || | || || Sbjct 20614 ATCTCCAATGAGCCTCTCTGTGTCGGTAAAGGCCACATAGCTGGGAGTGGTCCTGTTGCC 20673 Query 518629 TTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGT 518688 || || || || || || |||||||| |||| || | | || |||||| | | || Sbjct 20674 CTGGTCGTTGGCGATGATCTCAACTTTGCCATGCTGGAAAATCCCAACACAAGAATAGGT 20733 Query 518689 TGTTCCTAAATCAATACCAATAG 518711 || || | |||||| ||||||| Sbjct 20734 GGTGCCCAGATCAATGCCAATAG 20756 >seq2860 Length=62146 Score = 116 bits (128), Expect = 3e-20 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 ||||| || || ||||| |||| || |||||||| || ||||| || || | || ||| Sbjct 60688 TTTTTGTCCAGGCCATAAGCAATGGCTGCAGCAGTGGGCTCATTGATGATGCGCAGCACA 60747 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 ||||| |||||||| |||| |||||||| |||||||| | || || || || || || Sbjct 60748 TTAAGCCCAGCAATGGTTCCAGCATCTTTGGTGGCTTGACGCTGGGAGTCATTGAAGTAA 60807 Query 518285 GCAGGAACAGTAATAACGGCAT 518306 ||||||||||| ||||| |||| Sbjct 60808 GCAGGAACAGTGATAACTGCAT 60829 Score = 86.0 bits (94), Expect = 5e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 517259 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 517318 |||| |||||| ||||| ||||||||||| | ||||| || || ||||| |||||||| Sbjct 59446 GCAGACACATTGAGAATGCCATTGGCATCTATGTCAAAGGTCACCTCAATCTGAGGGACA 59505 Query 517319 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 517378 ||||| |||||||||| || | || | ||| | ||||| ||||||| || || Sbjct 59506 CCTCTGGGAGCAGGTGGAATACTGGTCAGCTCAAACTTGCCCAGGATATTATTGTCCTTG 59565 Query 517379 GT 517380 || Sbjct 59566 GT 59567 >seq1043 Length=203059 Score = 102 bits (112), Expect = 6e-16 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 ||||| || || ||||| |||| ||||||||||||||||||||| || || | | ||| Sbjct 13933 TTTTTGTCCAGGCCATAAGCAATAGCAGCAGCAGTTGGTTCATTGATGATACGAAGGACA 13992 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 ||||| |||| ||| | ||||| ||||| ||||| || | || || || || || || Sbjct 13993 TTAAGGCCAGAAATGGTCCCTGCGTCTTTGGTGGCCTGGCGCTGAGAGTCATTGAAGTAG 14052 Query 518285 GCAGGAACAGTAATAACGGCATCAGTTAC 518313 ||||| ||||| | || || | ||||| Sbjct 14053 GCAGGCACAGTCACGACAGCGTTTGTTAC 14081 >seq290 Length=227343 Score = 89.7 bits (98), Expect = 4e-12 Identities = 130/184 (71%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 518523 CAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 518582 |||| | |||||||| || || || ||| | |||| |||||||||||||| ||||| Sbjct 44775 CAAAGACCGTATTGGTGGGGTTCATGGCAACCTGATTCTTGGCTGCATCTCCTATCAGCC 44716 Query 518583 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 518642 || | ||||| || | ||||| || || || | || || || ||||| |||| Sbjct 44715 TCTCACTGTCTGTGAAGGCCACATAGCTGGGTGTGGTCCTGTTGCCCTGGTCATTGGCAA 44656 Query 518643 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 518702 | ||||||||||| |||| || | ||||| ||||| | || || || | ||||| Sbjct 44655 TGATTTCAACTTTGCCATGCTGGAACACACCAACACAGGAGTAGGTGGTCCCAAGATCAA 44596 Query 518703 TACC 518706 |||| Sbjct 44595 TACC 44592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3779919355295788