Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maccullochella_20peelii_20[genbank_20GCA_5F002120245.1_202017-05-09] 18,198 sequences; 633,241,041 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq4434 363 2e-95 seq1043 197 2e-45 seq290 192 7e-44 >seq4434 Length=55202 Score = 363 bits (402), Expect = 2e-95 Identities = 1007/1524 (66%), Gaps = 34/1524 (2%) Strand=Plus/Plus Query 6579 CTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGATAATCTCCCCT 6638 |||| || || || || || || |||||| | || || |||||||| | || |||| Sbjct 1326 CTTTGTATTTGTCAGCGTCCTGCACCATCCTCTCGATCTCTTCTTTGCTCAGTCGGCCCT 1385 Query 6639 TATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCAGCACTTACAT 6698 |||| || || || || ||||| | ||| || | | || || | ||| |||| Sbjct 1386 TATCGTTGGTGATGGTGATCTTGTTCTCTTTGCCGGTGCTTTTGTCCACCGCAGACACAT 1445 Query 6699 TCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTACCCCTCG--G 6756 |||| || || || || || || ||||| | || | || ||||| |||||||| | Sbjct 1446 TCAAGATGCCGTTGGCGTCCACGTCGAAGGTGACCTCGATCTGTGGG--ACCCCTCGCGG 1503 Query 6757 TGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTCGCCTTCTT 6816 || | || || ||||| | ||||| | || || | |||| ||| | | | | Sbjct 1504 AGCAGGCGGGATTCCCGTCAGCTCAAACTTGCCCAGCAGGTTGTTGTCCTTGGTCATGGC 1563 Query 6817 ACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCCGTTGA-GA 6875 | ||| ||||| ||||| | || ||| | || || || || | | | || || Sbjct 1564 TCTTTCCCCTTCGTAGACCTGGATGAGGACCCCGGGCTGGTTGTCA-GCGTAGGTGCTGA 1622 Query 6876 AGATTTGT-TCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTCATAATA 6934 ||| || ||| | |||| || || || || || | ||| | | ||||| | Sbjct 1623 AGACCTGGGTCTGT-TTAGCGGGGATGGTGGTGTTGCGTTTAATCAGGGACGTCATGACT 1681 Query 6935 CCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTTGA 6994 || || || |||| || || |||||||| | |||||||| || | |||||| ||| Sbjct 1682 CCTCCAGCCGTCTCGATACCCAGGGACAGAGGAGCCACGTCCAGCAGCAGCAGGTCCTGA 1741 Query 6995 ACAGATTCGTTCCCT------TCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTAT 7048 || ||| || || || || | |||||||| ||||| | || ||||| Sbjct 1742 AC------GTTGCCCGAGGTATCGCCTGTGAGAATGGCGGCCTGGACGGCAGCACCGTAA 1795 Query 7049 GCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGAT 7108 || ||||||||||| ||||| || | || ||||| || | ||||| || ||||| Sbjct 1796 GCCACCGCCTCATCTGGGTTGATGCTCTTGTTCAGCTCCCTGCCGTTGAAGAAATCCTGC 1855 Query 7109 AACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACT 7168 | | || || ||||| ||||| || || || || ||||||| ||||| || | | Sbjct 1856 AGGAGTTTCTGGATTTTGGGGATCCGGGTGGAGCCTCCGACCAGGACGATGTCGTGGATC 1915 Query 7169 TTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGG 7228 | || || || || || | ||| | || | ||| || || || || | | | | Sbjct 1916 TGCGCCTTGTCCATTTTGGCGTCCCTCAGGGCTTTCTCCACCGGCTCTAATGTTCCCCTG 1975 Query 7229 AACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACG 7288 |||| ||| ||||| |||||||| || || | ||| ||||| || ||||| || | | Sbjct 1976 AACAGGTCGGAGCACAGCTCCTCAAAGCGAGCCCTGGTGATGGAGGTGTAGAAGTCGATG 2035 Query 7289 CCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTT 7348 || || | | |||||||| |||||| | | || | | || || | |||| ||| Sbjct 2036 CCCTCAAACAGAGAATCAATCTCAATGCTGGCCTGGGAGCTGGAGGACAGGGTTCTCTTG 2095 Query 7349 GCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTC 7408 || | |||||| || || || | | | | ||| | | ||| | || || ||| Sbjct 2096 GCCCTCTCACAAGCTGTGCGCAGCCTCCTCAAGGCTCTCTTGTTCTGGCTGATGTCCTTC 2155 Query 7409 TTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCA 7468 || ||||| | || ||||| || | |||||| | | | || || ||||| Sbjct 2156 TTGTGTTTCCTCTTGAACTCCTCCGTGAAGTGGTTCACCATGCGGTTGTCAAAGTCTTCT 2215 Query 7469 CCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTT 7528 ||||||| ||| || || || || || |||||||| |||||||| || |||||||| | Sbjct 2216 CCACCCAGGTGAGTGTCTCCAGCTGTGGCTTTGACCTCAAAGATGCCGTCTTCAATGGTC 2275 Query 7529 AACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTT-CGTATCGTC 7587 | | || || || || || || || |||| |||||| || || ||||| ||| || | Sbjct 2276 AGGATGGACACGTCGAAGGTGCCTCCGCCCAAGTCAAAGATCAGGACGTTACGT-TCTCC 2334 Query 7588 GTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACG 7647 ||| || || |||||||||||||| || |||||||| || || || || || | Sbjct 2335 TGACTTGACTTTGTCCAGACCGTACGCGATGGCGGCCGCCGTCGGCTCGTTGATGATCCT 2394 Query 7648 AAG-ACAGTTCAGGCCAGCAATAGTTGCC-GCATCTTTCGTCGCTTGTCGTTGCGAATCG 7705 || ||| ||||| || | || | ||| || ||||| ||||| ||||| || || ||| Sbjct 2395 CAGGACA-TTCAGTCCTGAGAT-GACGCCTGCGTCTTTAGTCGCCTGTCGCTGGGAGTCG 2452 Query 7706 TTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCC 7765 || ||||| |||||||| || | |||||||| | || || | ||||| || | || Sbjct 2453 TTGAAGTACGCCGGGACTGTGATGACCGCGTTGGACACCTTGTGGCCGAGGTAGGCCTCA 2512 Query 7766 GCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTC 7825 || || || ||||| || || || ||||| || ||||||||||||| | | | |||| Sbjct 2513 GCAATCTCCTTCATCTTCGTCAGGACCATGGAGGAAATCTCTTCAG-GGTAGAAGGTTTT 2571 Query 7826 GT-TTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACCTT 7884 || || || || | || || | ||| |||| || | || | || || ||||| Sbjct 2572 GTCCTCCCCTTTGTATTCCACCTGAATTTTGGGCTTCCCTCCATCTCC---GACCACCTT 2628 Query 7885 ATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAG 7944 | | ||| | ||||| || | || ||| | | || | ||||||||| || || Sbjct 2629 GAAGGGCCAGTGCTTCATGTCAGCCTGCACCACTGGATCATTCAGCTTTCTTCCAATCAG 2688 Query 7945 ACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTC 8004 | ||| || ||||| || ||||| ||||||||| || |||||||| || ||||| Sbjct 2689 TCTCTTGGCGTCAAACACAGTGTTGCTGGGGTTCAAAGCCACCTGGTTCTTGGCTGCGTC 2748 Query 8005 CCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCC 8064 ||| || || | || | | || || ||||| || || ||||| || | || || Sbjct 2749 CCCAATGAGCC--TC-TCTGTGTCAGTGAACGCCACATAGCTGGGGGTGGTCCTGTTGCC 2805 Query 8065 TTGGTCGTTCGCAATAATTTCTAC 8088 |||||||| || || |||||||| Sbjct 2806 CTGGTCGTTGGCGATGATTTCTAC 2829 >seq1043 Length=203059 Score = 197 bits (218), Expect = 2e-45 Identities = 373/543 (69%), Gaps = 8/543 (1%) Strand=Plus/Plus Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099 || || || || || || || || |||||||| | ||||| || || || || || ||| Sbjct 13165 GCACCATAGGCCACTGCTTCGTCAGGGTTAATGCTCTTATTGAGCTCCTTCCCATTGAAA 13224 Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159 ||||| |||| | || || || || || || || || || || ||||| || || Sbjct 13225 AAATCCTGCAACAGCTTCTGGATCTTGGGAATACGAGTGGAACCTCCCACCAATACAATG 13284 Query 7160 TCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATA 7219 || | |||| | || || ||||| | || || || | ||||| ||||| |||| Sbjct 13285 TCGTGGACTTGGGCCTTGTCCATCTTGGCATCACGTAGAGCCTTTTCCACAGGCTCCAGG 13344 Query 7220 CATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAG 7279 | ||||||| ||| | ||| |||||||| || || | ||| || || || ||| Sbjct 13345 GTTCCTCGGAACAGGTCTGCATTCAGCTCCTCAAACCGGGCCCTGGTGATCGAGGTGTAG 13404 Query 7280 AAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAAC 7339 || || || || || || | ||||| ||||||||| | | || | | || || | Sbjct 13405 AAGTCGACTCCCTCATACAGAGAATCGATTTCAATGCTGGCCTGAGTGCTGGACGACAGA 13464 Query 7340 GTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAA 7399 || ||||| || | ||| || || || || | |||||| | || | | ||| | Sbjct 13465 GTGCGCTTGGCCCTCTCGCATGCTGTACGCAGACGACGCACCGCCCTCTTGTTGTCACTG 13524 Query 7400 ATATCTTTCTTATGTTTACGTTTAAACTCTTCAGA-GAAGTG-TCGA--AGGAGTCTCGA 7455 || |||||||| | || ||||| ||||| ||| |||||| | || | | | | Sbjct 13525 ATGTCTTTCTTGTACTTGCGTTTGAACTCGG-AGATGAAGTGGTTGACCATGCGGTT--- 13580 Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 ||| || ||||| |||||||||||||| || || || || | ||||| |||||||| || Sbjct 13581 ATCAAAGTCTTCTCCACCCAAGTGTGTGTCGCCTGCTGTGGACTTGACCTCAAAGATGCC 13640 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 ||||||| | || | || |||||||| || ||||||||||||||||| ||||| || Sbjct 13641 ATCTTCAATAGTCAAGATGGAGACATCAAATGTGCCACCACCCAGGTCAAAGATGAGGAC 13700 Query 7576 GTT 7578 ||| Sbjct 13701 GTT 13703 Score = 93.3 bits (102), Expect = 5e-14 Identities = 108/143 (76%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAA-GACA 7653 || || || || || || || ||||| || || ||||||||||| || ||||||| |||| Sbjct 13933 TTTTTGTCCAGGCCATAAGCAATAGCAGCAGCAGTTGGTTCATTGATGATACGAAGGACA 13992 Query 7654 GTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTA 7713 || ||||||| ||| || | || ||||| || || || || || || || || ||||| Sbjct 13993 -TTAAGGCCAGAAATGGTCCCTGCGTCTTTGGTGGCCTGGCGCTGAGAGTCATTGAAGTA 14051 Query 7714 GGCCGGGACCGTTACGACCGCGT 7736 ||| || || || ||||| |||| Sbjct 14052 GGCAGGCACAGTCACGACAGCGT 14074 >seq290 Length=227343 Score = 192 bits (212), Expect = 7e-44 Identities = 370/543 (68%), Gaps = 6/543 (1%) Strand=Plus/Minus Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099 || ||||| || || || ||||| || || || | || || || || || || || || Sbjct 46319 GCTCCGTAGGCCACAGCTTCATCTGGATTGATGCTCTTGTTGAGCTCCTTTCCATTGAAG 46260 Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159 ||||| | || | || || || ||||| || || || ||||||||||| ||||| Sbjct 46259 AAATCCTGGAGCAGCTTCTGGATCTTGGGGATACGGGTGGAGCCACCGACCAACACGATG 46200 Query 7160 TCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATA 7219 || | | | | |||||| ||||| | ||| || |||| || || || || |||| Sbjct 46199 TCGTGAATCTGCCCTTTATCCATCTTGGCGTCACGGAGTGACTTCTCCACGGGGTCCAAG 46140 Query 7220 CATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAG 7279 |||||| | ||| || |||||||| || || | ||| || || || ||| Sbjct 46139 GTGCCACGGAAGAGGTCAGCGTTGAGCTCCTCAAAGCGAGCCCTGGTGATTGAGGTGTAG 46080 Query 7280 AAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAAC 7339 || ||||| || ||||| | || || ||||||||| | | || | | ||||| | Sbjct 46079 AAGTCAACTCCCTCGTACAGAGAGTCGATTTCAATGCTGGCCTGGGTGCTGGAAGACAGG 46020 Query 7340 GTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAA 7399 || |||||||| | |||||| || || || | |||||| | || | | ||| | Sbjct 46019 GTGCGCTTTGCCCTCTCACATGCGGTGCGCAGACGACGGACAGCTCTCTTGTTGTCACTG 45960 Query 7400 ATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTG-TCGA--AGGAGTCTCGAA 7456 || || ||||| | || ||||| |||||| || ||||| | || | | | | Sbjct 45959 ATGTCCTTCTTGTACTTGCGTTTGAACTCTGCAATAAAGTGGTTGACCATGCGGTTG--- 45903 Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||||||||| ||||| | || ||||| || || || | ||||| ||||||||||| Sbjct 45902 TCGAAATCTTCCCCACCAAGATGAGTATCTCCAGCAGTGGACTTGACCTCAAAGATACCA 45843 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | || ||| | || | |||||||| || || |||||||| || ||||| ||||| ||| Sbjct 45842 TCCTCGATGGTCAAGATGGAAACATCGAAGGTGCCACCACCAAGATCAAAGATGAGAACG 45783 Query 7577 TTC 7579 ||| Sbjct 45782 TTC 45780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634988323166320