Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maccullochella_20peelii_20[genbank_20GCA_5F002120245.1_202017-05-09] 18,198 sequences; 633,241,041 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq4239 203 4e-47 seq7404 89.7 6e-13 seq49 89.7 6e-13 >seq4239 Length=33969 Score = 203 bits (224), Expect = 4e-47 Identities = 905/1404 (64%), Gaps = 52/1404 (4%) Strand=Plus/Minus Query 111704 GTTCATCCACGCAACACCAACCCTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAG 111763 ||||| |||||| | || || ||||||||||| || || || || || ||||||| Sbjct 31243 GTTCACCCACGCCTCCCCTACGCTCTTCAACGCAGGAACCAACAGGCCACAGCTGTCCAG 31184 Query 111764 TTGTTTCCTTATTGCAAACAAGGAGGATTCAATCAATGGCATTTACGGCACTCTCACTGA 111823 || ||||| | || | || || || ||| | |||||||| | ||| || | | Sbjct 31183 CTGCTTCCTGCTCGCCATGAAAGACGACAGCATCGAAGGCATTTATGACACGCTGAAGCA 31124 Query 111824 ATGTGCCCAAATCTCAAAGTGGGCTGGTGGTATCGGGATGCACATCCATGATG--TCAGA 111881 |||||||| ||||| ||| ||||| || ||||| || || | || ||||| Sbjct 31123 ATGTGCCCTCATCTCCAAGGCAGCTGGAGGAATCGGCGTGGCGGTCA--GCTGCATCAGA 31066 Query 111882 GCCAACAAGTCTCGTATTAGA-GGTACAAATGGTCAATCAGATGGTATTATTCCAATGCT 111940 | ||| | | | | || ||||| || | || |||| | | || ||||| Sbjct 31065 TC-AACGGGGAGCTACATCGCTGGCACAAACGGCAACTCCAATGGGCTAGTCCCCATGCT 31007 Query 111941 TCGCGTATTTAACGCCACAGCGCGCTATGTAAACCAAGCTGGGCGTCGCAAGG----GAT 111996 | || | |||| |||||| || ||||| |||| | ||| | | ||| || Sbjct 31006 GAGAGTTTATAACAACACAGCACGTTATGTCGACCAGGGTGG-CAACAAGAGGCCCGGAG 30948 Query 111997 CTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTC 112056 | | || | || || ||||| |||||| ||| | | || ||||| ||| || Sbjct 30947 CCTTTGCCATGTACCTGGAGCCCTGGCACTTTGATGTGTTTGACTTCCTGGAGCTGAAGA 30888 Query 112057 TCAACCAAGGTGATGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAG 112116 ||| ||| | |||||| | | | | ||||| |||| ||| | ||||| || | Sbjct 30887 AGAACACAGGAAAGGAGGAGCAGAGAGCCAGAGATCTTTTCTACGCCATGTGGATCCCCG 30828 Query 112117 ATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAAT---TGGTCTCTCTTTTGTCCAGACA 112173 | || |||||||||||||| ||| || | | |||||||| | |||||| Sbjct 30827 ACCTGTTCATGAAGAGAGT---GGAAAGCAACCAAGACTGGTCTCTGATGTGTCCAAGTG 30771 Query 112174 AGGCACCCGGTCTCTCCGA-TGCCGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTAC 112232 || || || || ||| ||| | ||| ||||||||||| ||||| || | || Sbjct 30770 AGTGCCCGGGGCTGGACGAGTGCTGGGGG-GAGGAGTTTGAGAAGCTCTATACCACATAT 30712 Query 112233 GAGGAAGAAAGTCGGGCGACTGCGAC-GGTGCCAGCTGCCGATGTGTGGAAAGCTATTCT 112291 ||| | || | ||| | ||| |||| ||| | ||||| | || ||| | Sbjct 30711 GAGAAGGAGGGGAGGGTCAA-GCGCTTGGTGAAGGCTCAGCAGCTGTGGCACGCCATTAT 30653 Query 112292 CAAGTCTCAAACCGAGACTGGTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAA 112351 | |||| || || || || ||||| ||||| ||||| ||||| ||||| || ||| || Sbjct 30652 CGAGTCCCAGACAGAAACCGGTACGCCATACATGCTGTACAAGGACGCGTGCAACAGGAA 30593 Query 112352 GAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGA 112411 ||| || || ||||| | || |||||||| ||||||||| ||||||||| | || Sbjct 30592 GAGCAACCAGCAGAATCTAGGCACCATCAAGAGCAGCAACCTCTGCACAGAAATCATTGA 30533 Query 112412 ATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTA 112471 || || | | |||||| |||||| ||||| || || || || || ||| || ||| Sbjct 30532 ATACACCAGCCACGATGAGGTGGCTGTCTGTAATCTGGCCTCCATTGCACTCAACATGTA 30473 Query 112472 TGTGGATCCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGT 112531 || || ||| |||| ||||| | | | ||||| | || || ||| || Sbjct 30472 CGTCACCCCTGAGC---AGACTTTTGACTTTAAGAAACTAGCGTATGTGACCAAA---GT 30419 Query 112532 CACA---AAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTC- 112587 | | |||||| |||||| | ||||| | || || || || || | ||| Sbjct 30418 AATAGTCAAAAACTTAAACAAGATAATTGAGATTAACTTCTATCCAGT---GCCTGAAGC 30362 Query 112588 -GTAAA-TCTAATATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGT 112645 | ||| || || | | | ||| | ||||| || |||||||||| ||| | || |||| Sbjct 30361 AGAAAAGTCCAACAAGCGTCACAGGCCAATAGGAATCGGTGTCCAGGGTTTGGCCGATGC 30302 Query 112646 ATTCATTCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTAT 112705 ||||| || || || | || || | ||| || || | || | || Sbjct 30301 CTTCATCCTCATGCGTTACCCGTTCGAAAGCCCCGAGGCTCAGCTGCTGAACATTCAGAT 30242 Query 112706 ATTTGAGACAATGTATCACGCCGCTCTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGA--- 112762 |||||||| || || ||||||| || ||||| || | ||| |||| || ||| Sbjct 30241 CTTTGAGACCATCTACTACGCCGCCCTGGAGGCAAGCTGCGAGCTGGC---GGCTGAGCT 30185 Query 112763 TGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCA-CAAGGGG-TGCTTCAATTTGAT 112820 ||| || ||||| || | || || ||||| | ||| ||| || | || || | || Sbjct 30184 TGGCCCCTATGAGACGTACGAAGGCTCTCCCG--TCAGCAACGGCATCCTCCAGTACGAC 30127 Query 112821 ATGTGGGAAGGTGAGACCAAGCTTCACTAC--GACTGGGACGCT-CTCAAGGAACGCATC 112877 |||||||| | || ||| | | | || | |||||| | ||| || ||||| || Sbjct 30126 ATGTGGGA-GAAGACACCCACCGAC-CTGCTGGACTGGAA-GCTGCTGAAGGAGAAGATT 30070 Query 112878 AAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCA 112937 || | || | | |||||||| || |||| || ||||| |||||||||||||| Sbjct 30069 GCCAAGCACGGCGTGAGGAACAGTCTGCTGCTGGCCCCGATGCCCACAGCCTCCACCGCC 30010 Query 112938 CAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTATCTGAGAAGA 112997 || ||| |||| || ||||| | ||||| | ||||| | |||||||| | || Sbjct 30009 CAGATCCTGGGCAACAATGAGTCTATTGAAGCTTACACCAGCAACATCTACACCCGCAGG 29950 Query 112998 ACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCATCTCGTGGATGACCTCAAAGAGATT 113057 |||| | ||||||||| ||| || || ||||| | | ||||| | |||| Sbjct 29949 GTCCTCTCTGGAGAGTTTCAGATCGTGAATCCACATCTGCTCAAAGACCTGACGGAGAGG 29890 Query 113058 GGTCTCTGGTCCAAGGATATGAAG 113081 || || ||| | |||| |||||| Sbjct 29889 GGGCTGTGGAGCGAGGAGATGAAG 29866 >seq7404 Length=21843 Score = 89.7 bits (98), Expect = 6e-13 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 102204 GTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGT 102263 || ||||| ||||||||||||||||||||| || || | ||||| |||||| |||| Sbjct 16124 GTGGAGGGAATCTTCTTCTCTGGTTCCTTCGCTGCGATCTTCTGGCTGAAGAAGAGAGGC 16183 Query 102264 CTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGG 102312 || ||||| || || ||||||||||||||| ||| | ||||||| Sbjct 16184 CTGATGCCCGGCCTGACCTTCTCCAACGAGCTCATCAGCAGAGACGAGG 16232 >seq49 Length=318415 Score = 89.7 bits (98), Expect = 6e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 102180 GAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCT 102239 |||||||| | || ||||| || ||||| ||||||||||| || || ||| || Sbjct 81435 GAGCGACTTGTGGCTTTTGCAGCAGTGGAGGGCATCTTCTTCTCCGGCTCATTCGCTGCC 81376 Query 102240 ATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTAT 102298 || ||||||||||||||| |||| || ||||| || || || |||||||||||| || Sbjct 81375 ATCTATTGGCTCAAGAAGAGAGGACTAATGCCTGGCCTTACCTACTCCAACGAGCTGAT 81317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620601196622560