Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maccullochella_20peelii_20[genbank_20GCA_5F002120245.1_202017-05-09] 18,198 sequences; 633,241,041 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq1499 100 3e-16 seq1161 100 3e-16 seq4239 98.7 1e-15 seq2144 93.3 5e-14 seq1789 93.3 5e-14 seq1626 93.3 5e-14 seq736 93.3 5e-14 seq403 93.3 5e-14 seq47 93.3 5e-14 seq195 86.0 7e-12 >seq1499 Length=189554 Score = 100 bits (110), Expect = 3e-16 Identities = 69/78 (88%), Gaps = 4/78 (5%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| Sbjct 36093 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCACGGGTTCGATCCCCGTA 36152 Query 136777 GGG----AACAGCTTTTA 136790 || |||||||||| Sbjct 36153 CGGGCCACACAGCTTTTA 36170 Score = 95.1 bits (104), Expect = 1e-14 Identities = 68/78 (87%), Gaps = 4/78 (5%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||| Sbjct 37556 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGTGGGTTCGATCCCCGTA 37615 Query 136777 GGG----AACAGCTTTTA 136790 || ||||||||||| Sbjct 37616 CGGGCCAAACAGCTTTTA 37633 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| ||||||||||||||| |||||||| |||||| Sbjct 33931 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCATGGGTTCGATCCCCGT 33989 >seq1161 Length=118247 Score = 100 bits (110), Expect = 3e-16 Identities = 78/93 (84%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 109752 GTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGA 109811 ||||||||| | ||||||| || | ||||||||||||| ||||| || |||||||| Sbjct 54907 GTAGATGTTGCTGGTGTAGGCCTCAATGGACTCATTGTTGCCCAGGATCTGGGCAGTGGA 54848 Query 109812 AGCTGTGGGCATGGGAGCCATGAGAAGACTGTT 109844 ||||||||||||||| |||| ||| |||||||| Sbjct 54847 AGCTGTGGGCATGGGGGCCAAGAGCAGACTGTT 54815 >seq4239 Length=33969 Score = 98.7 bits (108), Expect = 1e-15 Identities = 141/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 110270 TGACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGG 110329 |||| || || ||| ||||| || || ||||| || |||| ||| || | | || Sbjct 30468 TGACGTACATGTTGAGTGCAATGGAGGCCAGATTACAGACAGCCACCTCATCGTGGCTGG 30527 Query 110330 TGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGAT 110389 ||||||| | ||||| || || | |||| ||||| ||| || | |||| ||| | Sbjct 30528 TGTATTCAATGATTTCTGTGCAGAGGTTGCTGCTCTTGATGGTGCCTAGATTCTGCTGGT 30587 Query 110390 TCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTG 110449 | || |||||| || ||||| || ||||||||||| ||||| ||||| ||||| | Sbjct 30588 TGCTCTTCCTGTTGCACGCGTCCTTGTACAGCATGTATGGCGTACCGGTTTCTGTCTGGG 30647 Query 110450 ACTTGAGAATGGCCTTCCA 110468 ||| || |||||| | ||| Sbjct 30648 ACTCGATAATGGCGTGCCA 30666 Score = 87.8 bits (96), Expect = 2e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 109752 GTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGA 109811 ||||||||| | ||||| | ||| | | ||||||||||||| ||||| || || ||||| Sbjct 29959 GTAGATGTTGCTGGTGTAAGCTTCAATAGACTCATTGTTGCCCAGGATCTGGGCGGTGGA 30018 Query 109812 AGCTGTGGGCATGGGAGCCATGAGAAGACTGTT 109844 ||||||||||| || |||| || |||||||| Sbjct 30019 GGCTGTGGGCATCGGGGCCAGCAGCAGACTGTT 30051 >seq2144 Length=158317 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 45829 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 45771 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 49119 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 49061 >seq1789 Length=188195 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 181240 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 181182 >seq1626 Length=143960 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 89689 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 89631 >seq736 Length=130991 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 83758 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 83816 >seq403 Length=176171 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 95411 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 95469 >seq47 Length=322066 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 274512 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 274454 >seq195 Length=222814 Score = 86.0 bits (94), Expect = 7e-12 Identities = 58/64 (91%), Gaps = 1/64 (2%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT- 136775 ||||||||||||||||||||||||||| | |||||||||||| ||||||||| ||| || Sbjct 191623 TAGCTCAGTTGGTTAGAGCGTGGTGCTAACAACGCCAAGGTCGCGGGTTCGATCCCTGTA 191564 Query 136776 TGGG 136779 |||| Sbjct 191563 TGGG 191560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588842022684400