Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maccullochella_20peelii_20[genbank_20GCA_5F002120245.1_202017-05-09] 18,198 sequences; 633,241,041 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq4239 215 6e-51 seq1161 93.3 5e-14 seq49 87.8 2e-12 >seq4239 Length=33969 Score = 215 bits (238), Expect = 6e-51 Identities = 907/1411 (64%), Gaps = 66/1411 (5%) Strand=Plus/Plus Query 105841 CTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGACGAGATGCTTGTTGAC 105900 |||||| |||| | ||| || || ||| | | || || |||| ||||| || || Sbjct 29866 CTTCATCTCCTCGCTCCACAGCCCCCTCTCCGTCAGGTCTTTGAGCAGATGTGGATTCAC 29925 Query 105901 AATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGTAGGGTTCAAA 105960 ||| ||||||||| | |||| || | |||||||| | ||||| | ||||| Sbjct 29926 GATCTGAAACTCTCCAGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAAGCTTCAAT 29985 Query 105961 GCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAG 106020 | ||||| || |||| ||| || |||||||||||||| ||||| || |||| || || Sbjct 29986 AGACTCATTGTTGCCCAGGATCTGGGCGGTGGAGGCTGTGGGCATCGGGGCCAGCAGCAG 30045 Query 106021 ACTGTTACGAAGACCCTTTTCCTTG---ATGCGTTCCTTGAGAACATCCCAGTC--GTAG 106075 |||||| | | || | |||| || ||||| || | | |||||| | || Sbjct 30046 ACTGTTCCTCACGCCGTG---CTTGGCAATCTTCTCCTTCAGCAGCTTCCAGTCCAGCAG 30102 Query 106076 TTGAGCTTGGTTTCACCTTCCCACATATCAAATTGAAGCACCCCTTGG--GACGTGGGAG 106133 | | | ||| || || ||||||| || | || || | || | | |||| |||| Sbjct 30103 GTCGG-TGGGTGTCTTCT-CCCACATGTCGTACTGGAGGATGCCGTTGCTGACG--GGAG 30158 Query 106134 AACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGG 106193 | || || | |||||||||| || | | | |||| || ||||| |||||||||| Sbjct 30159 AGCCTTCGTACGTCTCATAGGGGCCAAGCTCAGCCGCCAGCTCGCAGCTTGCCTCCAGGG 30218 Query 106194 ATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAA 106253 |||| || ||||| |||||||| || |||| | || || || || | Sbjct 30219 CGGCGTAGTAGATGGTCTCAAAGATCTGAATGTTCAGCAGCTGAGCCTCGGGGCTTTCGA 30278 Query 106254 ATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTC 106313 | | ||| || | || || |||| || | ||| || ||||| | || || || | Sbjct 30279 ACGGGTAACGCATGAGGATGAAGGCATCGGCCAAACCCTGGACACCGATTCCTATTGGCC 30338 Query 106314 TGTGTCGCATATTAGACTTTCGCGCAGTCTCA---ACGGGATAAAAATTTCTGTCAATGA 106370 |||| ||| | || |||||| || ||| || ||||| || || | ||||| | Sbjct 30339 TGTGACGCTTGTTGGACTTTTCTGCT---TCAGGCACTGGATAGAAGTTAATCTCAATTA 30395 Query 106371 CTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGA---AGTTTTTCATAATCAA 106427 ||||| |||||| || || | || | ||| ||||| | | | |||| Sbjct 30396 TCTTGTTTAAGTTTTTG---ACTATTACTTTGGTCACATACGCTAGTTTCTTAAAGTCAA 30452 Query 106428 AAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAG 106487 |||| | ||| |||| ||| | || || || || |||| ||| || |||| Sbjct 30453 AAGTCTG---CTCAGGGGTGACGTACATGTTGAGTGCAATGGAGGCCAGATTACAGACAG 30509 Query 106488 CCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCG 106547 || |||||| | ||||| || | |||||||| || | |||| ||||| || | Sbjct 30510 CCACCTCATCGTGGCTGGTGTATTCAATGATTTCTGTGCAGAGGTTGCTGCTCTTGATGG 30569 Query 106548 TCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCG 106607 | || | ||||| ||||| ||||| |||||||||| |||||||| |||||||| |||| Sbjct 30570 TGCCTAGATTCTGCTGGTTGCTCTTCCTGTTGCACGCGTCCTTGTACAGCATGTATGGCG 30629 Query 106608 TCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACACAT-CGGCGGCTGGTACAATG 106666 | || || || ||||| |||| || ||| || | ||||| | | | | || ||| Sbjct 30630 TACCGGTTTCTGTCTGGGACTCGATAATGGCGTGCCACAGCTGCTGAGCCTTCACCAAGC 30689 Query 106667 GCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACC 106726 || ||| ||| |||||| ||| || | || ||||| ||||||||||| ||| | Sbjct 30690 GC-TTGACCCTCCCCTCCTTCTCATATGTGGTATAGAGCTTCTCAAACTCCTC-CCCCCA 30747 Query 106727 GC-GTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCA---TTGACCACCCTC 106782 || ||| || || || || |||||| | |||||||| ||| | || Sbjct 30748 GCACTCGTCCAGCCCCGGGCACTCACTTGGACACATCAGAGACCAGTCTTGGTTGCTTTC 30807 Query 106783 CTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCG 106842 | || | ||||||||| ||||| || ||||||| || | || |||||||| | Sbjct 30808 C---ACTCTCTTCATGAACAGGTCGGGGATCCACATGGCGTAGAAAAGATCTCTGGCTCT 30864 Query 106843 AGCCTCTTCGTCACCTTGGTTGAGTCGT-AACTCAAGGAACTCCATGATATCCGCGTGCC 106901 ||| || | ||| ||| || | | ||| ||||| || | | ||| ||||| Sbjct 30865 CTGCTCCTCCTTTCCTGTGTT-CTTCTTCAGCTCCAGGAAGTCAAACACATCAAAGTGCC 30923 Query 106902 ATGGCTCAAGATAGACTGCGATAGATC----CCTTTCGACGCCCAGCTTGATTTACATAG 106957 | ||||| || || | || | | || ||| | | | ||| | || | ||||| Sbjct 30924 AGGGCTCCAGGTACATGGCAAAGGCTCCGGGCCTCTTGTTG-CCACCCTGGTCGACATAA 30982 Query 106958 CGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTC 107017 || |||||| |||| | || | ||||| || | | |||| || | || ||||| Sbjct 30983 CGTGCTGTGTTGTTATAAACTCTCAGCATGGGGACTAGCCCATTGGAGTTGCCGTTTGTG 31042 Query 107018 CCCCGAATACGAGATTTATTGGCTC-----TCACATCATGGATGTG-----CATCCCAAT 107067 || | ||| || |||| | | | ||| | || || || || Sbjct 31043 CC-------AGCGATGTA---GCTCCCCGTTGATCTGATGCAGCTGACCGCCACGCCGAT 31092 Query 107068 ACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGAT 107127 || ||||| ||| ||||| | ||||| | | | || || |||| || || | ||| Sbjct 31093 TCCTCCAGCTGCCTTGGAGATGAGGGCACATTGCTTCAGCGTGTCATAAATGCCTTCGAT 31152 Query 107128 TGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGC 107187 ||| || || |||||| |||||||| ||||||| ||| || || || || || Sbjct 31153 GCTGTCGTCTTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCCTGTTGGTTCCTGC 31212 Query 107188 ATTGAAGAGGGTTGGTGTTGCGTGAATGAAC 107218 |||||||| || || | ||||| ||||| Sbjct 31213 GTTGAAGAGCGTAGGGGAGGCGTGGGTGAAC 31243 >seq1161 Length=118247 Score = 93.3 bits (102), Expect = 5e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 106504 TGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTG 106563 ||||||||||| || || || |||| ||| || || || |||| ||||| || Sbjct 53945 TGTGTACTCTACGATCTCCGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTG 53886 Query 106564 GTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTG 106623 ||| ||||| ||||||| || ||||||||||||||||| ||||| || || || ||||| Sbjct 53885 GTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGCGTACCGGTTTCTGTCTG 53826 Query 106624 TGACTTGAGAATTGCCTTCCACAC 106647 |||| | || || | |||||| Sbjct 53825 AGACTCAATTATAGCGTACCACAC 53802 >seq49 Length=318415 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 117293 CCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTCT 117352 ||||||| | | ||| || || || ||| || ||||| ||||| || || | ||||| Sbjct 81303 CCTCATCCCTGCTAATCAGCTCGTTGGAGTAGGTAAGGCCAGGCATTAGTCCTCTCTTCT 81362 Query 117353 TCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAACG 117412 | | |||||| || || |||||| |||||||||||||| |||||||| ||||| | Sbjct 81363 TGAGCCAATAGATGGCAGCGAATGAGCCGGAGAAGAAGATGCCCTCCACTGCTGCAAAAG 81422 Query 117413 CAAAAAGGCGCTC 117425 | | ||| ||||| Sbjct 81423 CCACAAGTCGCTC 81435 Score = 82.4 bits (90), Expect = 9e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 116977 AATTTCCCATAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATG 117036 ||| || ||| ||| | ||||| ||||||||||||||||| ||||| || || |||| Sbjct 79548 AATCTCTGATACTCCGCTACTCGTTTCTCAAAGAAGTTGGTTTTCCCCTCTAGTGAAATG 79607 Query 117037 TTTTCCATAAAGTCAAATGGATTCT 117061 |||||| |||||||||||||||| Sbjct 79608 GATTCCATGAAGTCAAATGGATTCT 79632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589846594117520