Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maccullochella_20peelii_20[genbank_20GCA_5F002120245.1_202017-05-09] 18,198 sequences; 633,241,041 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq4239 178 1e-39 seq49 82.4 9e-11 >seq4239 Length=33969 Score = 178 bits (196), Expect = 1e-39 Identities = 606/934 (65%), Gaps = 10/934 (1%) Strand=Plus/Plus Query 47874 TTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATT 47933 || ||||| || || || |||||||| ||||| ||||||| | | || |||| || Sbjct 30479 TTGAGTGCAATGGAGGCCAGATTACAGACAGCCACCTCATCGTGGCTGGTGTATTCAATG 30538 Query 47934 ATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTG 47993 ||||| | || || || | | ||||| || || | ||| || || || | || Sbjct 30539 ATTTCTGTGCAGAGGTTGCTGCTCTTGATGGTGCCTAGATTCTGCTGGTTGCTCTTCCTG 30598 Query 47994 TTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATA 48053 || || ||||||||||| ||||| | || || || |||||| |||| || || || || Sbjct 30599 TTGCACGCGTCCTTGTACAGCATGTATGGCGTACCGGTTTCTGTCTGGGACTCGATAATG 30658 Query 48054 GATTTCCAAACAG-TCCT-AGCCTTTATAACAGCTCTAG-CTTTATTATCATGTTCGTAT 48110 | | ||| ||| | || |||||| | | ||| || | | | || | || ||| Sbjct 30659 GCGTGCCA--CAGCTGCTGAGCCTTCACCA-AGCGCTTGACCCTCCCCTCCTTCTCATAT 30715 Query 48111 TTAGTATATAACTTCTCAAATTCATCCCCATA-CACATTATCTAACCCAGGACATTCATT 48169 | ||||| | ||||||||| || ||||| | ||| | || | ||| || || ||| | Sbjct 30716 GTGGTATAGAGCTTCTCAAACTCCTCCCCCCAGCAC-TCGTCCAGCCCCGGGCACTCACT 30774 Query 48170 AGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTAT 48229 |||||||||| ||||| || | | ||| ||||| |||| || | || || || Sbjct 30775 TGGACACATCAGAGACCAGTCTTGGTTGCTTTCCACTCTCTTCATGAACAGGTCGGGGAT 30834 Query 48230 CCAAAGAGC-TATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAA 48288 ||| | || || ||| | ||| || | ||| | || || || || | ||| | || | Sbjct 30835 CCACATGGCGTAGAAA-AGATCTCTGGCTCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCA 30893 Query 48289 GTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTG 48348 | || || ||||| | | |||| ||||| || || | || || || | | || | Sbjct 30894 GCTCCAGGAAGTCAAACACATCAAAGTGCCAGGGCTCCAGGTACATGGCAAAGGCTCCGG 30953 Query 48349 GTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTG 48408 | | || || || || || || | ||| | || || |||||||||||||| | ||| | Sbjct 30954 GCCTCTTGTTGCCACCCTGGTCGACATAACGTGCTGTGTTGTTATAAACTCTCAGCATGG 31013 Query 48409 GGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATAT 48468 |||| | ||||| || | || || || || | || || || || | | ||| || Sbjct 31014 GGACTAGCCCATTGGAGTTGCCGTTTGTGCCAGCGATGTAGCTCCCCGTTGATCTGATGC 31073 Query 48469 TACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGG 48528 || | | | || || || || || || || || || ||||| | || || | Sbjct 31074 AGCTGACCGCCACGCCGATTCCTCCAGCTGCCTTGGAGATGAGGGCACATTGCTTCAGCG 31133 Query 48529 TATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTT 48588 | |||||||| ||||| || || || ||| |||| | || || || || |||| | Sbjct 31134 TGTCATAAATGCCTTCGATGCTGTCGTCTTTCATGGCGAGCAGGAAGCAGCTGGACAGCT 31193 Query 48589 GCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTG 48648 | || ||||||| || || | || || || || || | ||||| ||||||| Sbjct 31194 GTGGCCTGTTGGTTCCTGCGTTGAAGAGCGTAGGGGAGGCGTGGGTGAACCACTTCTCTG 31253 Query 48649 ATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATA 48708 | |||| || || || || || | | || |||||| || || || || | || | Sbjct 31254 ACAACAGGTTGTAGGTCTCGATGGCTGCGTCGATATCCGTTTTGTGGATCCCAACAGCCA 31313 Query 48709 CACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATG 48768 | | ||| | ||| | || || | || | | |||| ||| || ||||| || || | Sbjct 31314 CTCTCATGAGCATGTGCTGCGGCCGCTCGGCCACTTTGCCATTGATCTTCAACAGGTAGG 31373 Query 48769 ATTTTTCCAATGTTTTAAAACCAAAATAGTTGTA 48802 | |||| || || || ||||| ||||||| Sbjct 31374 ACCGCTCCAGCGTCTTGAAGCCAAAGAAGTTGTA 31407 >seq49 Length=318415 Score = 82.4 bits (90), Expect = 9e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 18657 CATTACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTC 18716 ||| ||||| | | | ||||| || || |||| ||| |||||||| || ||||| ||||| Sbjct 79538 CATAACTCCAAATCTCTGATACTCCGCTACTCGTTTCTCAAAGAAGTTGGTTTTCCCCTC 79597 Query 18717 TAATGATATACATTCCATAAAATCAAATGGATT 18749 || ||| || ||||||| || ||||||||||| Sbjct 79598 TAGTGAAATGGATTCCATGAAGTCAAATGGATT 79630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561980934300720