Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maccullochella_20peelii_20[genbank_20GCA_5F002120245.1_202017-05-09] 18,198 sequences; 633,241,041 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq2667 181 9e-40 seq2860 127 2e-23 seq1043 107 2e-17 >seq2667 Length=57246 Score = 181 bits (200), Expect = 9e-40 Identities = 449/679 (66%), Gaps = 2/679 (0%) Strand=Plus/Minus Query 551913 ACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCACTATTGAAGTA 551972 || ||||| || ||||| || | | || || || | || || | | ||||| | Sbjct 19980 ACAGCTTGTGAGAGAGCGAAGAGGACCCTGTCCTCCAGCACCCAGGCTAGCATTGAGATC 19921 Query 551973 GATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAATTTGAAGAT 552032 || || | |||||||| ||||| | | || | || | ||||| ||||| || Sbjct 19920 GACTCTCTGTTTGAGGGCATTGACTTCTACACATCCATCACAAGGGCACGCTTTGAGGAG 19861 Query 552033 ATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTTAAGAGATTCA 552092 | ||||| ||||| ||| |||| | |||||||| || | | | |||| | Sbjct 19860 TTAAACTCTGAGCTCTTCAGAGGAACACTGGAACCAGTTGAGAAGGCCCTGCAAGATGCC 19801 Query 552093 AAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCCT 552152 ||| | ||||| ||||| | ||||| || || || |||||||| || ||||||||||| Sbjct 19800 AAGCTGGATAAGTCCAAGATCCATGATATCGTCCTGGTTGGTGGCTCCACAAGAATTCCC 19741 Query 552153 AAAATTCGCGAAATGTTA-AGTTCTTATTTCAATGGTAAAAAATTAAATGAAAGTGTTAA 552211 ||||| | | | || || ||| ||| ||||| | | || | || | || | || Sbjct 19740 AAAATCCAGAAGCTCTTGCAGGACTTTTTT-AATGGCAGAGAACTGAACAAGAGCATCAA 19682 Query 552212 TCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAAAC 552271 |||||||| ||||| ||||| ||||| ||| | || || ||||| || || | || Sbjct 19681 CCCAGATGAAGCTGTGGCCTACGGTGCAGCAGTCCAGGCTGCTATCCTCATGGGTGACAC 19622 Query 552272 TGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGA 552331 | ||||| | ||| || | | || | || || |||| || ||||| || | || Sbjct 19621 TTCAGAAAACGTCCAAGATCTGCTGCTGCTGGACGTGGCTCCCCTGTCTCTGGGCATTGA 19562 Query 552332 AACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAAAA 552391 || | || || ||||||| ||| ||| | ||||||| || || || || | Sbjct 19561 GACTGCAGGTGGAGTTATGACGCCTCTAATCAAACGAAATACCACCATCCCCAACAAGCA 19502 Query 552392 ATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTGA 552451 | | | || || || ||||| ||||| || ||| ||| ||||| | | ||| Sbjct 19501 GACCCAGATCTTCTCCACATATTCGGATAACCAGCCTGGTGTGCTGATTCAGGTGTATGA 19442 Query 552452 AGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTAT 552511 || || ||| | || || || || || | || || | ||| | | |||||| Sbjct 19441 GGGTGAGAGAGCCATGACCAAGGACAACAACCTCCTGGGAAAGTTTGAGCTCACAGGTAT 19382 Query 552512 TCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGG 552571 ||||||||||| || || ||||| || | || || |||||||| |||||||||||||| Sbjct 19381 CCCTCCTGCTCCCCGAGGTGTACCACAGGTGGAGGTAACTTTCGACATCGATGCCAATGG 19322 Query 552572 AATTTTGAATGTGACTGCT 552590 ||| |||||||| ||||| Sbjct 19321 CATTCTGAATGTGTCTGCT 19303 Score = 138 bits (152), Expect = 9e-27 Identities = 387/590 (66%), Gaps = 12/590 (2%) Strand=Plus/Minus Query 549990 TAGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTA 550049 || |||| || || ||| | || ||||| ||| ||||||||| ||| || |||| | Sbjct 20759 TATCTATTGGCATTGATCTGGGCACCACCTATTCTTGTGTTGGGATTTTCCAGCATGGCA 20700 Query 550050 AAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCA 550109 ||||||| || || ||||| || || || ||||| || ||||| ||||| | || | Sbjct 20699 AAGTTGAGATCATCGCCAACGACCAGGGCAACAGGACCACTCCCAGCTATGTGGCCTTTA 20640 Query 550110 CGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCA 550169 | || || || | |||| |||| || || | || | || || || |||| Sbjct 20639 CCGACACAGAGAGGCTCATTGGAGATGGTGCCAAGAACCAGGTTGCTATGAACCCCACCA 20580 Query 550170 ATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGG 550229 | || || |||||||| ||||| ||||||| |||| ||||| ||| | | ||| ||| Sbjct 20579 ACACAATCTTTGATGCCAAACGGCTAATTGGGAGAAAGTTTAACGATGCCATTGTCCAGT 20520 Query 550230 CAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAG 550289 | || ||||| | ||||||||| | | | | || |||||| || | | | || Sbjct 20519 CCGACATGAAACTCTGGCCTTTCAAGGTGATCAGTGACAATGGAAAGCCCAA-AGTCCAG 20461 Query 550290 CT--ACTCATGAAGGATCTGTTAAACAA----TTTTCACCAGAACAAATTTCATCTATGG 550343 | | | || |||| | | ||| || | ||||| |||| || || |||| Sbjct 20460 GTGGAGT-ATAAAGG----GGAGACCAAGGCCTTCTACCCAGAGGAAATCTCCTCCATGG 20406 Query 550344 TTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAG 550403 | | | |||||||| | | || || | | || || || | |||||| Sbjct 20405 TCCTGGTTAAAATGAAGGAGATCGCTGAGGCCTACCTGGGACAGAGGGTGTCAAATGCAG 20346 Query 550404 TAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGAC 550463 | || || || ||||| ||||| |||||||| || | ||||| || || || || || Sbjct 20345 TCATCACAGTTCCAGCTTATTTCAATGACTCTCAGAGGCAAGCCACCAAGGACGCCGGGG 20286 Query 550464 GTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCAT 550523 || ||||||| ||||| || | || ||||| || || || || || || | || | Sbjct 20285 TGATCTCTGGACTGAATGTCCTGAGGATCATCAACGAGCCCACAGCAGCAGCCATAGCCT 20226 Query 550524 ATGGACTTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGAT 550573 |||| || |||||| ||| ||| | ||||| |||||||||||| Sbjct 20225 ATGGCCTGGATAAAGGTAAAAGAGGAGAGCGCAATGTGCTCATCTTTGAT 20176 >seq2860 Length=62146 Score = 127 bits (140), Expect = 2e-23 Identities = 112/140 (80%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 ||||||| || ||||| || || || || |||||||| || |||||||| || ||||||| Sbjct 60829 ATGCAGTTATCACTGTTCCTGCTTACTTCAATGACTCCCAGCGTCAAGCCACCAAAGATG 60770 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 ||||| |||||||| |||||||| || || || |||||||| || |||||||| || Sbjct 60769 CTGGAACCATTGCTGGGCTTAATGTGCTGCGCATCATCAATGAGCCCACTGCTGCAGCCA 60710 Query 550518 TTGCATATGGACTTGATAAA 550537 |||| ||||| || || ||| Sbjct 60709 TTGCTTATGGCCTGGACAAA 60690 >seq1043 Length=203059 Score = 107 bits (118), Expect = 2e-17 Identities = 101/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468 ||||| || || || || |||||||| || || || || || ||||| || || ||| Sbjct 14063 ACTGTGCCTGCCTACTTCAATGACTCTCAGCGCCAGGCCACCAAAGACGCAGGGACCATT 14004 Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528 |||| |||||||| |||||||| ||||||||||| ||||||||||| |||| ||||| Sbjct 14003 TCTGGCCTTAATGTCCTTCGTATCATCAATGAACCAACTGCTGCTGCTATTGCTTATGGC 13944 Query 550529 CTTGATAAA 550537 || || ||| Sbjct 13943 CTGGACAAA 13935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028333607687020