Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maccullochella_20peelii_20[genbank_20GCA_5F002120245.1_202017-05-09] 18,198 sequences; 633,241,041 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq112 143 2e-29 seq3956 116 3e-21 >seq112 Length=268450 Score = 143 bits (158), Expect = 2e-29 Identities = 130/164 (79%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 || || |||| ||| || |||||||| || || || | |||||||| || || || || Sbjct 20156 AGTCCTGTGATGTGTGCGATCATGTAGGTAAGAAGTGCATAGCTGGCTATATTGAAAGGC 20215 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 ||||| || ||||| || ||||| | |||||| ||||||||||| ||||| || || | | Sbjct 20216 ACCCCCAGGCCCATATCACCCGAACGCTGGTACAGCTGACACGACAGCTCACCATCACAC 20275 Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAG 30032 ||||| |||||||||| || |||||| || || ||||||||||| Sbjct 20276 ACGTAGAACTGACACAGGGCGTGGCAGGGGGGCAGAGCCATGAG 20319 Score = 129 bits (142), Expect = 5e-25 Identities = 136/175 (78%), Gaps = 3/175 (2%) Strand=Plus/Plus Query 30157 GTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCT 30216 |||||||| || || || |||||||||||||| || ||||| ||||||||||| || || Sbjct 21404 GTGTACTCGGCACCAAAGTGCCTCCACTGGAAACCATACACAGGTCCCAGGTCGCCTTCC 21463 Query 30217 TCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATC 30276 || || | |||||| ||||||| ||||| | ||| || ||||| ||||| ||| Sbjct 21464 TCTCTATCAGTGAAGCCAAGGTTGTCCAGGAAGTCCCGGGACCCATTGGCATCCCAAATC 21523 Query 30277 TTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACA 30331 |||||||| ||| | |||||||| |||| ||||| || || ||| || |||||| Sbjct 21524 TTTACCCCTTTCGCCGAGAGCTCCTTGGCATTTGTTGATCC-CTG-CG-ACCACA 21575 >seq3956 Length=75287 Score = 116 bits (128), Expect = 3e-21 Identities = 88/104 (85%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 112106 GCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGG 112165 |||||||||||||||| | ||| ||||||| |||||||||| ||||| || ||||||| Sbjct 45300 GCTCCCTGCTGAGGACAATGTTGATCCTGTTGTTCAGAGGTCTGTTCTTCTCTGGGATGG 45241 Query 112166 AGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209 | ||||| ||||| || ||||| || ||||| |||||||||||| Sbjct 45240 AAAACCACGTCTTCCTGCCCATGATGACCACATTCTGCTTGCCT 45197 Score = 95.1 bits (104), Expect = 1e-14 Identities = 72/85 (85%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 112261 AGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATGTCTGGACACACG 112320 ||||| |||||||||| ||||||| | | || |||||||| |||| ||| |||||||| Sbjct 41346 AGTCTAACAGGATGCCAGGGCAGATTTTCATTTTTCCCGATACCCAGGTCAGGACACACT 41287 Query 112321 GCCACGATACCGTTCAGAATGAGGG 112345 ||||||||| ||||||||||| ||| Sbjct 41286 GCCACGATAGCGTTCAGAATGCGGG 41262 Score = 87.8 bits (96), Expect = 1e-12 Identities = 93/121 (77%), Gaps = 4/121 (3%) Strand=Plus/Minus Query 111860 ACTCTGGCAGTAGACGATATCTCTCTAGACTTTTCTATGGGAGAAAAGTGTCGCACGCAA 111919 |||||||||| ||||||||| | ||| |||| | | ||||| || ||||| ||| ||| Sbjct 49499 ACTCTGGCAGAAGACGATATTTGTCTGGACTGATTTCAGGGAGGAATGTGTCACACTCAA 49440 Query 111920 ATTGCGTC--GACACGTGAGTGACAAACAGCCTCTTTGTCCCCGGGCTCTCCATGAGCTC 111977 | ||| || || |||| ||| ||||| ||| | ||||||||||||||||| | ||| Sbjct 49439 ACTGCTTCAGGATTCGTG--TGATGAACAGTCTCCTGGTCCCCGGGCTCTCCATCAACTC 49382 Query 111978 C 111978 | Sbjct 49381 C 49381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408526973468654