Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maccullochella_20peelii_20[genbank_20GCA_5F002120245.1_202017-05-09] 18,198 sequences; 633,241,041 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq4239 257 3e-63 seq7404 114 2e-20 seq49 100 5e-16 >seq4239 Length=33969 Score = 257 bits (284), Expect = 3e-63 Identities = 569/841 (68%), Gaps = 28/841 (3%) Strand=Plus/Plus Query 221366 CCATCGTACGACTCGTAGGGACC--GTACAGTTCGGCCTGGGCGCAAGACTGCGTC-AGG 221422 || ||||||| ||| ||||| || | ||| | ||| | |||| | ||| || ||| Sbjct 30161 CCTTCGTACGTCTCATAGGGGCCAAGCTCAG--CCGCCAGCTCGCA-GCTTGCCTCCAGG 30217 Query 221423 GCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGAAGTG 221482 || |||| ||||||||||||||||||| |||| || || |||||||| | Sbjct 30218 GCGGCGTAGTAGATGGTCTCAAAGATCTGAATGTTCAGCAGCTGAGCCTCGGGGCTTTCG 30277 Query 221483 AAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGGC 221542 || || ||||| | ||| | ||||||| ||||| || ||||| || || ||| Sbjct 30278 AACGGGTAACGCATGAGGATGAAGGCATCGGCCAAACCCTGGACACCGATTCCTATTGGC 30337 Query 221543 CTGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGATCAGA 221602 ||||| | | ||||||| | ||||| ||||| ||||| ||||| | || || | Sbjct 30338 CTGTGACGCTTGTTGGACTTTTCTGCTTCAGGCACTGGATAGAAGTTAATCTCAATTATC 30397 Query 221603 TTGTTGAGGTTCA-GAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAACAC 221661 ||||| | ||| || | || ||||| ||| | | || |||| | | || Sbjct 30398 TTGTTTAAGTTTTTGACT-ATTACTTTGGTCACATACGCTAGTTTCTTAA-AGTCAA--- 30452 Query 221662 CAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAGGTT 221721 || || | | |||||| | | | | || || |||| | |||||| || Sbjct 30453 -AAGTCTGCTC--------AGGGGTGACGTACATG--TTGAGTGCAATGGAGGCCAGATT 30501 Query 221722 ACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCA 221781 ||| || |||||||| || | | |||| || | ||||| ||||| ||||||||||||| Sbjct 30502 ACAGACAGCCACCTCATCGTGGCTGGTGTATTCAATGATTTCTGTGCAGAGGTTGCTGCT 30561 Query 221782 CTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCAT 221841 ||||||||| || || | | || || ||| | ||| ||||||||||| ||||| Sbjct 30562 CTTGATGGTGCCTAGATTCTGCTGGTTGCTCTTCCTGTTGCACGCGTCCTTGTACAGCAT 30621 Query 221842 AAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTG-GCGC 221900 | || || || || ||| | | | | ||| || ||| || | ||| || Sbjct 30622 GTATGGCGTACCGGTTTCTGTCTGGGACTCGATAATGGCGTGCCACAGCTG-CTGAGCCT 30680 Query 221901 TCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCATGTCAAACT 221960 ||||| | |||||| ||||| ||| ||||| |||||||||| | ||||||| Sbjct 30681 TCACCAAGCGCTTGACCCTCCCCTC---CTTCTCATATGTGGTATAGAGCTTCTCAAACT 30737 Query 221961 TTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTCCAGTGCT 222020 || || | ||||||||| || || ||| |||||||||||| ||||| | Sbjct 30738 CCTCCCCCCAGCACTCGTCCAGCCCCGGGCACTCACTTGGACACATCAGAGACCAGTCTT 30797 Query 222021 TGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTC 222080 |||| || || |||| |||||| ||||| |||||||||| || | || ||||||| Sbjct 30798 GGTTGCTTTCCACTCTCTTCATGAACAGGTCGGGGATCCACATGGCGTAGAAAAGATCTC 30857 Query 222081 TGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAG 222140 ||| | |||||||||| || |||| ||| |||| |||| || ||||| | ||| Sbjct 30858 TGGCTCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACATCAA 30917 Query 222141 CGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCA 222200 |||||| |||||||| || | ||| | || ||||| | ||||||||||||||| || | Sbjct 30918 AGTGCCAGGGCTCCAGGTACATGGCAAAGGCTCCGGGCCTCTTGTTGCCACCCTGGTCGA 30977 Query 222201 C 222201 | Sbjct 30978 C 30978 Score = 96.9 bits (106), Expect = 6e-15 Identities = 131/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 221065 CATCTCGTCCGTCCATAGACCCCTCTCTTCCAGCACCTTGACCATGTGCTTGTTCACCAC 221124 |||||| || |||| || |||||||| ||| | |||| || || ||||| | Sbjct 29869 CATCTCCTCGCTCCACAGCCCCCTCTCCGTCAGGTCTTTGAGCAGATGTGGATTCACGAT 29928 Query 221125 TTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGATGCT 221184 || || ||||| ||||| ||||| | ||| | ||| ||| | | ||| || Sbjct 29929 CTGAAACTCTCCAGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAAGCTTCAATAGA 29988 Query 221185 CTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAGACT 221244 ||| ||||||||||||||||| || ||| ||| |||||||| || |||| ||||||||| Sbjct 29989 CTCATTGTTGCCCAGGATCTGGGCGGTGGAGGCTGTGGGCATCGGGGCCAGCAGCAGACT 30048 Query 221245 GTT 221247 ||| Sbjct 30049 GTT 30051 >seq7404 Length=21843 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 || ||||| |||| ||||| || || |||||||| ||||| ||| ||||| || || Sbjct 16097 GGAGAGCGCGTGGTGGCCTTCGCCGCCGTGGAGGGAATCTTCTTCTCTGGTTCCTTCGCT 16156 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTC 25992 || ||||||||||| ||| ||| || |||||||| ||| ||| |||||||||||| Sbjct 16157 GCGATCTTCTGGCTGAAGAAGAGAGGCCTGATGCCCGGCCTGACCTTCTCCAACGAGCTC 16216 Query 25993 ATCAGCAGGGACGAGG 26008 |||||||| ||||||| Sbjct 16217 ATCAGCAGAGACGAGG 16232 >seq49 Length=318415 Score = 100 bits (110), Expect = 5e-16 Identities = 106/137 (77%), Gaps = 2/137 (1%) Strand=Plus/Minus Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 || ||||| || || || ||||| || |||||||||||||| ||| ||| || || || Sbjct 81438 GGGGAGCGACTTGTGGCTTTTGCAGCAGTGGAGGGCATCTTCTTCTCCGGCTCATTCGCT 81379 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCA-TGCCCGGGCTGTACTTTTCCAACGAGCT 25991 ||||||| ||||||||| ||| | |||| | |||| || || || ||||||||||| Sbjct 81378 GCCATCTATTGGCTCAAGAAGA-GAGGACTAATGCCTGGCCTTACCTACTCCAACGAGCT 81320 Query 25992 CATCAGCAGGGACGAGG 26008 || |||||||| |||| Sbjct 81319 GATTAGCAGGGATGAGG 81303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928633511029120