Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maccullochella_20peelii_20[genbank_20GCA_5F002120245.1_202017-05-09] 18,198 sequences; 633,241,041 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq2667 141 6e-28 seq1043 89.7 3e-12 seq2860 87.8 1e-11 seq4434 86.0 4e-11 seq76 86.0 4e-11 >seq2667 Length=57246 Score = 141 bits (156), Expect = 6e-28 Identities = 415/632 (66%), Gaps = 12/632 (2%) Strand=Plus/Minus Query 475548 TTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAAT 475607 |||| | || ||||| ||||| || ||||| | | || || |||||||| | Sbjct 19928 TTGAGATCGACTCTCTGTTTGAGGGCATTGACTTCTACACATCCATCACAAGGGCACGCT 19869 Query 475608 TTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTCA 475667 |||| || | ||||| ||||| ||| |||| | ||||| ||||| | | || Sbjct 19868 TTGAGGAGTTAAACTCTGAGCTCTTCAGAGGAACACTGGAACCAGTTGAGAAGGCCCTGC 19809 Query 475668 GAGATTCTAAACTTGACAAATCACAAG-TCCATGAAATTGTTCTTGTAGGAGGTTCAACA 475726 |||| | || || || || || |||| ||||||| || || || || || || || ||| Sbjct 19808 AAGATGCCAAGCTGGATAAGTC-CAAGATCCATGATATCGTCCTGGTTGGTGGCTCCACA 19750 Query 475727 AGAATTCCAAAAATAAGAGAAATGCTTTCATCA-TATTTTAATGGTAAAAAGTTAAATGA 475785 |||||||| ||||| |||| ||| || | | ||||||||| | | | | || | Sbjct 19749 AGAATTCCCAAAAT-CCAGAAGCTCTTGCAGGACTTTTTTAATGGCAGAGAACTGAACAA 19691 Query 475786 AAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTATC 475845 || | || || ||||||||||| || || || || || ||||| || ||||| | Sbjct 19690 GAGCATCAACCCAGATGAAGCTGTGGCCTACGGTGCAGCAGTCCAGGCTGCTATCCTCAT 19631 Query 475846 AGGTCA---ATCAGACGAGAAAC-TAAATAATATTGTACTTGTTGACGTAACTCCACTTT 475901 ||| | ||||| |||| | | || | | || | ||||| |||| || | Sbjct 19630 GGGTGACACTTCAGA----AAACGTCCAAGATCTGCTGCTGCTGGACGTGGCTCCCCTGT 19575 Query 475902 CATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTA 475961 | | || |||| || | || || ||||||| ||| || | ||||||| | | Sbjct 19574 CTCTGGGCATTGAGACTGCAGGTGGAGTTATGACGCCTCTAATCAAACGAAATACCACCA 19515 Query 475962 TCCCATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACCA 476021 |||| ||| | | | | || ||||| ||||| ||||| || | ||| | Sbjct 19514 TCCCCAACAAGCAGACCCAGATCTTCTCCACATATTCGGATAACCAGCCTGGTGTGCTGA 19455 Query 476022 TCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTA 476081 | || | | ||| ||||| ||| | || || || || ||| || |||| ||| Sbjct 19454 TTCAGGTGTATGAGGGTGAGAGAGCCATGACCAAGGACAACAACCTCCTGGGAAAGTTTG 19395 Query 476082 ATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATA 476141 | || |||||| |||||||||||| |||| || || || | || || ||||| || | Sbjct 19394 AGCTCACAGGTATCCCTCCTGCTCCCCGAGGTGTACCACAGGTGGAGGTAACTTTCGACA 19335 Query 476142 TTGATGCAAATGGTATTCTTAATGTTACTGCT 476173 | ||||| ||||| ||||| ||||| ||||| Sbjct 19334 TCGATGCCAATGGCATTCTGAATGTGTCTGCT 19303 >seq1043 Length=203059 Score = 89.7 bits (98), Expect = 3e-12 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 474728 GTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACT 474787 ||||| | || || | ||||| || || || || ||||| ||||| || || || || Sbjct 14081 GTAACAAACGCTGTCGTGACTGTGCCTGCCTACTTCAATGACTCTCAGCGCCAGGCCACC 14022 Query 474788 AAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCA 474847 ||||| || || | ||| | || |||||||| | ||||| || ||||||||||| || Sbjct 14021 AAAGACGCAGGGACCATTTCTGGCCTTAATGTCCTTCGTATCATCAATGAACCAACTGCT 13962 Query 474848 GCCGCACTTGCTTATGGTCTTGATAAGAA 474876 || || |||||||||| || || || || Sbjct 13961 GCTGCTATTGCTTATGGCCTGGACAAAAA 13933 >seq2860 Length=62146 Score = 87.8 bits (96), Expect = 1e-11 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 476032 TGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGG 476091 ||||||||| ||| | || || || ||||| | || || | ||| | || | Sbjct 59586 TGAAGGTGAGAGAGCCATGACCAAGGACAATAATATCCTGGGCAAGTTTGAGCTGACCAG 59527 Query 476092 TATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAA 476151 |||||| |||||||||||||| || ||||| ||||| || || ||||| || ||||| || Sbjct 59526 TATTCCACCTGCTCCCAGAGGTGTCCCTCAGATTGAGGTGACCTTTGACATAGATGCCAA 59467 Query 476152 TGGTATTCTTAATGTTACTGC 476172 ||| ||||| ||||| |||| Sbjct 59466 TGGCATTCTCAATGTGTCTGC 59446 >seq4434 Length=55202 Score = 86.0 bits (94), Expect = 4e-11 Identities = 355/550 (65%), Gaps = 10/550 (2%) Strand=Plus/Minus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 || || || || || | || || || ||| ||||| | |||| || |||| ||| Sbjct 2889 GCGATCGGCATCGACCTGGGCACCACCTACTCCTGTGTGGGGGTTTTCCAGCATGGAAAA 2830 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 |||||||| || ||||| ||||| || || || || || || ||||| | || ||| Sbjct 2829 GTAGAAATCATCGCCAACGACCAGGGCAACAGGACCACCCCCAGCTATGTGGCGTTCACT 2770 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAAT 474508 || || || || ||||| || || || || | || | || | || || || Sbjct 2769 GACACAGAGAGGCTCATTGGGGACGCAGCCAAGAACCAGGTGGCTTTGAACCCCAGCAAC 2710 Query 474509 ACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACT-GTCCAATC 474567 ||| | ||||| || || ||| ||||||| | || | ||||| ||| | || || | Sbjct 2709 ACTGTGTTTGACGCCAAGAGACTGATTGGAAGAAAGCTGAATGAT-CCAGTGGTGCAGGC 2651 Query 474568 TGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACC--ATATATAGAA 474625 ||| ||| || ||||| || |||||| | | ||| || || || | || || Sbjct 2650 TGACATGAAGCACTGGCCCTTCAAGGTGGTCGGAGATGGAGGGAAGCCCAAAATTCAGGT 2591 Query 474626 GCAATACACGCAGGTGA-AACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTT 474684 | |||||| ||| || || |||| || | || ||| | ||||| || ||||| | Sbjct 2590 GGAATACA--AAGGGGAGGACAAAAC-CTTCTACCCTGAAGAGATTTCCTCCATGGTCCT 2534 Query 474685 AGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAA 474743 | || ||||| | | || ||| | || || || || | || | | || || | Sbjct 2533 GACGAAGATGAAGGAGATTGCTGAG-GCCTACCTCGGCCACAAGGTGTCCAACGCGGTCA 2475 Query 474744 TTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAA 474803 | || || || || || || || || || || || || || |||||||| || || | Sbjct 2474 TCACAGTCCCGGCGTACTTCAACGACTCCCAGCGACAGGCGACTAAAGACGCAGGCGTCA 2415 Query 474804 TTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATG 474863 | |||| || ||||| | | || || || || || || || ||||| | || || | Sbjct 2414 TCTCAGGACTGAATGTCCTGAGGATCATCAACGAGCCGACGGCGGCCGCCATCGCGTACG 2355 Query 474864 GTCTTGATAA 474873 |||| || || Sbjct 2354 GTCTGGACAA 2345 >seq76 Length=279335 Score = 86.0 bits (94), Expect = 4e-11 Identities = 129/180 (72%), Gaps = 5/180 (3%) Strand=Plus/Plus Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC- 474447 || || || || ||||||||||| ||||| | | || ||||||||||| | || || Sbjct 40090 GTGGAGATCATCGCCAATGACCAGGGTAACCGCATCACCCCATCATATGTGGCCTTCACC 40149 Query 474448 --TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTG-CATCTAATCCTGT 474504 ||| ||| | ||| ||||| |||||||| || | || | || | ||||| || | Sbjct 40150 AGTGAGGGTGAGCGTCTGATTGGTGATGCTGCCAAGAACCA-GTTGACCTCTAACCCAGA 40208 Query 474505 TAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCA 474564 || ||| | |||||||| || ||||||||||| || | || | ||| ||||||| || Sbjct 40209 GAACACTGTCTTTGATGCCAAGAGATTGATTGGGCGCACTTGGGGTGACTCCACTGTGCA 40268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267398599483304