Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maccullochella_20peelii_20[genbank_20GCA_5F002120245.1_202017-05-09] 18,198 sequences; 633,241,041 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq415 174 2e-38 >seq415 Length=356447 Score = 174 bits (192), Expect = 2e-38 Identities = 575/872 (66%), Gaps = 24/872 (3%) Strand=Plus/Minus Query 160098 TCGAATTTATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGAC 160157 || ||||||||| | || ||||| || ||| || ||| || | ||| || | Sbjct 29960 TCAAATTTATTTCCAAAGAGATGTTGTTGTTTCCAGAG---CCACTGGAGGTCACCAGCT 29904 Query 160158 CCGAACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTC 160217 ||| |||| || || | | | ||| | || ||||||| |||| ||||||| || Sbjct 29903 CCGTACACACAAACTGCTCTTCTGTAAGCACCTGTGCAAGGATAGTACGGAGCTCCGTTT 29844 Query 160218 GCCACGTCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAG 160277 | || ||| | | || ||||||||| | | || | || |||||||| || Sbjct 29843 TTTATATCTCCTGCTAAATAGCTCCACTTCACCACACGAGCGAAGGCTTGCATGTCTGAC 29784 Query 160278 GTGTCGTATTTGTACATCAGG-GGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGT 160336 | || || ||| | | || || | | |||||||| |||||| | |||||| || Sbjct 29783 ATATCATACTTG-ATGTTAGCAGGCATTGACCCGGGAACAGAGGGCATCCTCTGTAGAGT 29725 Query 160337 GGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGAT 160396 |||||||| ||| || || ||||||||||||||||| ||| |||| ||| | || || Sbjct 29724 GGCCCACAAGTGCTCATCAGGGCTGTACGTGTCCTTCTCCCACTCCA-GAAATTTCTGAA 29666 Query 160397 TAAC-CTGTCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGC 160455 | |||||| ||| || || | || ||| ||| || || ||||| || || | | Sbjct 29665 CTTCTCTGTCCTGCATCACATGTTTCACAAAGGCTCTTGTGACCACAAAATAAGCATTTC 29606 Query 160456 CGGAGAATATCGGTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTA-GACACC 160514 | || || || || || || || || | | |||| |||| || ||| || | Sbjct 29605 CTGAAAACATGGGGCTGCTAATGGGTGGAG-GACTTT-TCCTCACATTTGTCCTGATGAC 29548 Query 160515 ACTCCTTTCACCAGCGC-GTGTCGCTTCTTCCACCTGACCATCTTGTG--CGGTGGCATG 160571 | | ||| | ||| | | || ||| | | | ||||||| | ||| || Sbjct 29547 AGTG---TCAGTGACATTGTGATGATACTCCCAACGGCCTTTCTTGTGGTCATTGG--TG 29493 Query 160572 CGTTCCGTCTCTAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGA-CGATCTCTAG 160630 || | ||| | ||||| |||| ||| | |||||| ||| ||| | |||||| Sbjct 29492 GCCTCAGACTCCATGCTGTTTCTCCCGTTGAGGGCTTTCAG-TGCCTGAACCATCTCTCC 29434 Query 160631 GTTCGTCTTGAGCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGC- 160689 || || |||| || ||||| || ||||| ||| | | |||| |||| | | Sbjct 29433 ATTGGTTTTGATGGGGAAGTCTGTCCCGCAGGTGTTAAGAAGGTACCTCCACTGGACATG 29374 Query 160690 TCAGGTCGTGCAGGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGT 160749 | || || |||| || ||||||| || | |||||||||||| ||| ||| || || | Sbjct 29373 TGAGCTCA-GCAGATCTTTCATGCAGTTCAAATCTGCCTGCACTCGGGACCATGAGGCAT 29315 Query 160750 ACACTACGTTCTCTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCA 160809 | | || | |||| | ||||||| |||| || ||| || || || | ||| || Sbjct 29314 ATATCACTGTTTCTAATCTACTGGCTCCAAACACATTAGGAAAGCAGGAAATAATTGCCT 29255 Query 160810 CCACCGCCAGAAAGAACATCTTATCCGCCTTTC-GGTCCACGTGCACGCAATACAGGTTC 160868 |||| ||| ||| |||| | |||| ||||||||||||| || || | |||| Sbjct 29254 CCACAGCCTTCT-GAAATTCTTTAGAGGATTTCTGGTCCACGTGCACACAGTAGATGTTC 29196 Query 160869 TGAGGCGCGTAGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACG 160928 ||||| ||||| | || | || | | ||| |||||||| ||||| | ||||||||| Sbjct 29195 TGAGGAGCGTAAACAGCTCGTAGAAGTCGCTCAAACATCTCAATCTTCTCATGGATCACC 29136 Query 160929 ATAGAGTAGGCTATCGGAAACTCGGTCTCCTC 160960 || |||||||| || |||||||| ||||||| Sbjct 29135 ATGGAGTAGGCAATGGGAAACTCATTCTCCTC 29104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577087897062480