Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maccullochella_20peelii_20[genbank_20GCA_5F002120245.1_202017-05-09] 18,198 sequences; 633,241,041 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq4239 201 1e-46 seq1161 98.7 1e-15 seq49 87.8 2e-12 >seq4239 Length=33969 Score = 201 bits (222), Expect = 1e-46 Identities = 658/1009 (65%), Gaps = 29/1009 (3%) Strand=Plus/Minus Query 75686 AGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGT 75745 |||||||| || | || ||||||| || ||||| ||||||||| | || ||| | Sbjct 30858 AGAGATCTTTTCTACGCCATGTGGATCCCCGACCTGTTCATGAAGAGAGT---GGAAAGC 30802 Query 75746 GGTCAA---TGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGAC-GCGGTGGG 75801 ||| |||||||| | |||||| || || || || ||| || | ||| Sbjct 30801 AACCAAGACTGGTCTCTGATGTGTCCAAGTGAGTGCCCGGGGCTGGACGAGTGCTGGGGG 30742 Query 75802 TGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGACTGT 75861 ||||||||||| ||||| || | ||||| ||||||| || | ||| ||| || Sbjct 30741 -GAGGAGTTTGAGAAGCTCTATACCACATATGAGAAGGAGGGGAGGGTCAA-GCGCTTGG 30684 Query 75862 ACCAGCCGCCG-ATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCAT 75920 || | | | | | ||| | || ||| || | || ||||| || || || || |||| Sbjct 30683 TGAAGGCTCAGCAGCTGTGGCACGCCATTATCGAGTCCCAGACAGAAACCGGTACGCCAT 30624 Query 75921 ATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCA 75980 | ||||| |||||||| || || |||| |||||| ||||| ||||| | || || |||| Sbjct 30623 ACATGCTGTACAAGGACGCGTGCAACAGGAAGAGCAACCAGCAGAATCTAGGCACCATCA 30564 Query 75981 AGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTT 76040 ||||| || || ||||| ||||| | || ||||| | |||||| |||||| | Sbjct 30563 AGAGCAGCAACCTCTGCACAGAAATCATTGAATACACCAGCCACGATGAGGTGGCTGTCT 30504 Query 76041 GCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTTTTGATT 76100 | ||| |||| || || || || | ||| |||| ||| | |||||||| | Sbjct 30503 GTAATCTGGCCTCCATTGCACTCAACATGTACGTCACCCCTGAG---CAGACTTTTGACT 30447 Query 76101 ATGAAAAACT---TCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATTG 76157 | | ||||| ||| | || | || || |||||| ||||| | |||| Sbjct 30446 TTAAGAAACTAGCGTATGTGACCAAAGTAATAGT---CAAAAACTTAAACAAGATAATTG 30390 Query 76158 ACAGAAATTTTTATCCCGT---TGAGACTGCGCGAAAGTCTAATATGCGACACAGACCTA 76214 | | || || ||||| || ||| || |||||| || | ||| ||||| || | Sbjct 30389 AGATTAACTTCTATCCAGTGCCTGA---AGCAGAAAAGTCCAACAAGCGTCACAGGCCAA 30333 Query 76215 TTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCATTTGATT 76274 | || | ||||| || ||| | || |||| || || | || ||| | || || Sbjct 30332 TAGGAATCGGTGTCCAGGGTTTGGCCGATGCCTTCATCCTCATGCGTTACCCGTTCGAAA 30273 Query 76275 CAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCCTGG 76334 || || || | |||| || |||||||| ||||| || |||| |||||| Sbjct 30272 GCCCCGAGGCTCAGCTGCTGAACATTCAGATCTTTGAGACCATCTACTACGCCGCCCTGG 30213 Query 76335 AGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTCCCG 76394 |||| || || || |||| | | | || |||||||||| | || || ||||||| Sbjct 30212 AGGCAAGCTGCGAGCTGGCGGCTGAGCTTGGCCCCTATGAGACGTACGAAGGCTCTCCCG 30153 Query 76395 CGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGCTCAACTAC--GA 76452 | | || | || |||| || ||||||| || || ||| | | | || | || Sbjct 30152 TCAGCAACGGCATCCTCCAGTACGACATGTGGG-AGAAGACACCCA-CCGACCTGCTGGA 30095 Query 76453 CTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGC 76512 |||| | | || ||||| || || | || | | |||||||| || |||| Sbjct 30094 CTGGAAGCTGCTGAAGGAGAAGATTGCCAAGCACGGCGTGAGGAACAGTCTGCTGCTGGC 30035 Query 76513 ACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCATA 76572 || ||||| |||||||||||||| || ||| |||| || ||||| | ||||| | || Sbjct 30034 CCCGATGCCCACAGCCTCCACCGCCCAGATCCTGGGCAACAATGAGTCTATTGAAGCTTA 29975 Query 76573 CACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAACAAGCA 76632 ||| | ||||||||| | || |||| | || |||||| || || || || Sbjct 29974 CACCAGCAACATCTACACCCGCAGGGTCCTCTCTGGAGAGTTTCAGATCGTGAATCCACA 29915 Query 76633 CCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAG 76681 || |||| ||||| | | ||| || || ||| | |||| |||||| Sbjct 29914 TCTGCTCAAAGACCTGACGGAGAGGGGGCTGTGGAGCGAGGAGATGAAG 29866 >seq1161 Length=118247 Score = 98.7 bits (108), Expect = 1e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 75875 GTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTACAAG 75934 || ||| | ||||| | | || ||||| || || || || ||||| ||||| |||||| Sbjct 53802 GTGTGGTACGCTATAATTGAGTCTCAGACAGAAACCGGTACGCCATACATGCTCTACAAG 53861 Query 75935 GATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTT 75994 || || || |||| |||||| ||||| ||||| |||| || ||||| | ||||| Sbjct 53862 GACGCCTGCAACAGGAAGAGCAACCAGCAGAATCTGGGCACCATCAAATCCAGCAATCTG 53921 Query 75995 TGCACGGAAATTTTAGAGTACACA 76018 |||||||| || ||||||||||| Sbjct 53922 TGCACGGAGATCGTAGAGTACACA 53945 >seq49 Length=318415 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 65077 GAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCT 65136 ||||| ||| | || ||||| |||||||| |||||||||||||| |||||| || Sbjct 81435 GAGCGACTTGTGGCTTTTGCAGCAGTGGAGGGCATCTTCTTCTCCGGCTCATTCGCTGCC 81376 Query 65137 ATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATT 65196 || |||||| | |||||| | || || ||||| ||||| || ||| || || || ||| Sbjct 81375 ATCTATTGGCTCAAGAAGAGAGGACTAATGCCTGGCCTTACCTACTCCAACGAGCTGATT 81316 Query 65197 TCCCGAGATGAGG 65209 | | ||||||| Sbjct 81315 AGCAGGGATGAGG 81303 Score = 82.4 bits (90), Expect = 9e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 65441 AGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACCAACTTCTTTGAGA 65500 |||||||||||||||| |||||| |||| || || ||||| |||||||||||||||| Sbjct 79632 AGAATCCATTTGACTTCATGGAATCCATTTCACTAGAGGGGAAAACCAACTTCTTTGAGA 79573 Query 65501 AGCGAGTTGGGGACTATGGGAAATT 65525 | ||||| | ||| ||| || ||| Sbjct 79572 AACGAGTAGCGGAGTATCAGAGATT 79548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596433895330240