Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maccullochella_20peelii_20[genbank_20GCA_5F002120245.1_202017-05-09] 18,198 sequences; 633,241,041 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq4239 134 4e-26 >seq4239 Length=33969 Score = 134 bits (148), Expect = 4e-26 Identities = 446/682 (65%), Gaps = 14/682 (2%) Strand=Plus/Plus Query 155474 TGGGTAAAAATTCACATCAATAATGTTATTTAAATTTGTAACCAATACCTTGGTTACGTC 155533 ||| || || || | ||||| || || ||||| ||| | || | ||| ||||| || | Sbjct 30373 TGGATAGAAGTTAATCTCAATTATCTTGTTTAAGTTTTTGACTATTACTTTGGTCACATA 30432 Query 155534 TGCTAATTTCACATAGTCAAATGTTTTATCCTCATTTACAAACATACCAAGACCAATAGA 155593 |||| |||| | ||||||| || | || | || |||| || |||| || Sbjct 30433 CGCTAGTTTCTTAAAGTCAAAAGTCTGCTCAGGGGTGACGTACATGTTGAGTGCAATGGA 30492 Query 155594 CGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTGTATTCTACAATCTCACAGCACAG 155653 ||||||||||| || || ||| | || | | ||||||| | || || ||| || Sbjct 30493 GGCCAGATTACAGACAGCCACCTCATCGTGGCTGGTGTATTCAATGATTTCTGTGCAGAG 30552 Query 155654 GTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATCCTT 155713 ||| |||||||||||||||| ||||| |||||| || ||||| || || ||||| Sbjct 30553 GTTGCTGCTCTTGATGGTGCCTAGATTCTGCTGGTTGCTCTTCCTGTTGCACGCGTCCTT 30612 Query 155714 GTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCAGAGGTC 155773 ||| || |||||||| || || || || |||| | || | ||| |||| || | Sbjct 30613 GTACAGCATGTATGGCGTACCGGTTTCTGTCTGGGACTCGATAATGGCGTGCCACAGCTG 30672 Query 155774 ACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATATTTCATATACAGCGTTCG 155833 | || || | ||| || || ||| ||||||| | |||| ||| ||| Sbjct 30673 CTGAGCCTTCACCAAGCGCTTGACCCTCCCCTCCTTCTCATATGTGGTATAGAGC-TTCT 30731 Query 155834 GTAA-TCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACAGCGACC 155892 || ||||| || | || || ||| || ||||||| | || || | ||| |||| Sbjct 30732 CAAACTCCTCCCCCCAGCACTCGTCCAGCCCCGGGCACTCACTTGGACACATCAGAGACC 30791 Query 155893 AAATTTTATTACCGATTACACGCTC--CATAAATACATCACTCGCCCAAATAGCATAGAA 155950 | || || | || ||| ||| ||| || | || ||| || || ||||| Sbjct 30792 AGTCTTGGTTGC--TTTCCACTCTCTTCATGAACAGGTCGGGGATCCACATGGCGTAGAA 30849 Query 155951 AAGGTCCCTTGC-CTTTGACTCCTCATCGCC-GTGATTCTTCCGTAGCTCTAAGAATTCC 156008 ||| || || || || || |||||| | || ||| |||||| ||||| | ||| || Sbjct 30850 AAGATCTCTGGCTCTCTG-CTCCTCCTTTCCTGTG-TTCTTCTTCAGCTCCAGGAAGTCA 30907 Query 156009 TCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTC---TTGCCA 156065 | |||| || |||||||| ||||| ||||| || |||| |||||| Sbjct 30908 AACACATCAAAGTGCCAGGGCTCCAGGTACATGGCAAAGGCTCCGGGCCTCTTGTTGCCA 30967 Query 156066 CCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTG 156125 ||||| || ||||| || || || || || | || | ||||| || | | |||||| Sbjct 30968 CCCTGGTCGACATAACGTGCTGTGTTGTTATAAACTCTCAGCATGGGGACTAGCCCATTG 31027 Query 156126 GAAGTGCCATTGGTTCC-GCGA 156146 || |||| || || || |||| Sbjct 31028 GAGTTGCCGTTTGTGCCAGCGA 31049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471474428248726