Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maccullochella_20peelii_20[genbank_20GCA_5F002120245.1_202017-05-09] 18,198 sequences; 633,241,041 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq11711 152 6e-31 seq8190 152 6e-31 seq5808 152 6e-31 seq5099 149 8e-30 seq2779 143 3e-28 seq290 143 3e-28 seq2418 93.3 5e-13 seq7404 91.5 2e-12 seq4017 86.0 8e-11 >seq11711 Length=2130 Score = 152 bits (168), Expect = 6e-31 Identities = 156/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||| ||||||||||||||||| | | | || Sbjct 240 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGGACGGCGGTCTGGATCTCCCTGGAGGTGA 181 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||| ||||| ||| |||||| | ||||||| |||| | Sbjct 180 TGGTGGAGCGCTTGTTGTAGTGAGCCAGGCGGGAGGCCTCACCGGCGATGCGCTCGAAAA 121 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | ||| ||||||||| |||||||| Sbjct 120 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTAGAGGAGATGCCGGTGTCGGGGT 61 Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546 | ||||| || | ||||||||||| Sbjct 60 GGACCTGTTTCATCACCTTGTAGA 37 >seq8190 Length=11411 Score = 152 bits (168), Expect = 6e-31 Identities = 155/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||| ||||||||||||||||| | | | || Sbjct 816 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGGACGGCGGTCTGGATCTCCCTGGAGGTGA 875 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||| ||||||||| || ||| | ||||||| |||| | Sbjct 876 TGGTGGAGCGCTTGTTGTAGTGAGCCAGACGGGAGGACTCACCGGCGATGCGCTCGAAGA 935 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||| | ||||| |||||||||| | ||| | |||| |||||| || |||||||| Sbjct 936 TGTCGCTCACAAAGGAGTTCATGATCAGCATGGCCTTGGAGGAGATCCCGGTGTCGGGGT 995 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | |||||||| |||||||| || Sbjct 996 GGACCTGCTTCAGCACCTTATA 1017 >seq5808 Length=40005 Score = 152 bits (168), Expect = 6e-31 Identities = 155/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||| ||||||||||||||||| | | | || Sbjct 34413 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGGACGGCGGTCTGGATCTCCCTGGAGGTGA 34472 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||| ||||||||| || ||| | ||||||| |||| | Sbjct 34473 TGGTGGAGCGCTTGTTGTAGTGAGCCAGACGGGAGGACTCACCGGCGATGCGCTCGAAGA 34532 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||| | ||||| |||||||||| | ||| | |||| |||||| || |||||||| Sbjct 34533 TGTCGCTCACAAAGGAGTTCATGATCAGCATGGCCTTGGAGGAGATCCCGGTGTCGGGGT 34592 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | ||||| || ||||||||||| Sbjct 34593 GGACCTGTTTCAGCACCTTGTA 34614 >seq5099 Length=50958 Score = 149 bits (164), Expect = 8e-30 Identities = 154/202 (76%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||| ||||||||||||||||| | | | || Sbjct 49524 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGGACGGCGGTCTGGATCTCCCTGGAGGTGA 49465 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||| ||||||||| || ||| | ||||||| |||| | Sbjct 49464 TGGTGGAGCGCTTGTTGTAGTGAGCCAGACGGGAGGACTCACCGGCGATGCGCTCGAAGA 49405 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||| | ||||| |||||||||| ||| | |||| |||||| || |||||||| Sbjct 49404 TGTCGCTCACAAAGGAGTTCATGATGCCCATGGCCTTGGAGGAGATCCCGGTGTCGGGGT 49345 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | ||||| || ||||||||||| Sbjct 49344 GGACCTGTTTCAGCACCTTGTA 49323 >seq2779 Length=54908 Score = 143 bits (158), Expect = 3e-28 Identities = 153/202 (76%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||| ||||||||||||||||| | | | || Sbjct 53842 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGGACGGCGGTCTGGATCTCCCTGGAGGTGA 53901 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| |||||||| |||| ||||| ||| || ||| | ||||||| |||| | Sbjct 53902 TGGTGGAACGCTTGTTGTAGTGAGCCAGGCGGGAGGACTCACCGGCGATGCGCTCGAAGA 53961 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||| | ||||| |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 53962 TGTCGCTCACAAAGGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCGGTGTCGGGGT 54021 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | |||||||| |||||||| || Sbjct 54022 GGACCTGCTTCAGCACCTTATA 54043 >seq290 Length=227343 Score = 143 bits (158), Expect = 3e-28 Identities = 154/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | |||||| ||||| ||||||||||| | | | || Sbjct 28422 GCTTGGCCAGCTCGCCGGGCAGCAGCAGGCGGACGGCAGTCTGGATCTCCCTGGAGGTGA 28481 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| | |||||| |||||||||| || || || ||||||| |||| | Sbjct 28482 TGGTGGATCTCTTGTTGTAGTGCGCCAGGCGCGACGCTTCCCCAGCGATGCGCTCGAAGA 28541 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 | |||||||||||||||||||||| ||| | |||| ||||| ||| ||| |||| Sbjct 28542 TATCGTTGACAAACGAGTTCATGATGCCCATGGCCTTGGATGAGATCCCCGTGTCTGGGT 28601 Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546 |||||||||| ||||||||||||| Sbjct 28602 GCACCTGCTTCAGCACCTTGTAGA 28625 >seq2418 Length=62437 Score = 93.3 bits (102), Expect = 5e-13 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 512050 CGTCATCTCCTTTGACGGCACCTACGTCAACGACCGCCACTTTGCGCTGGCCACCGACAC 512109 |||||||||||||||||| |||| |||||| |||| ||||| || ||| | ||||| Sbjct 1508 CGTCATCTCCTTTGACGGTTCCTATGTCAACTACCGTCACTTGGCTCTGCTCTGTGACAC 1449 Query 512110 CATGTGCTGCCGCGGATCGGTGGTGGCCGTCACGCGCCACGGCTTCAACCG 512160 |||| |||||||| || ||||| ||||||| |||||| ||||||| Sbjct 1448 CATGACGTGCCGCGGTCACCTGATGGCCATCACGCGTCACGGCATCAACCG 1398 >seq7404 Length=21843 Score = 91.5 bits (100), Expect = 2e-12 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 869831 ACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTACATCTCCCATACTTGCTGG 869890 |||||||| |||||||||| |||||||||||||| |||||||||| ||| | | ||| Sbjct 14853 ACCTCCTCTGCGGTCCAGAAAGAGGCCTCGGCCTTCTTGTACATCTGCCAGATGTCGTGG 14794 Query 869891 TAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGTC 869928 || |||| ||||||| ||| ||||| |||||| || Sbjct 14793 TACTGGATGGGGAAGATGACGAAGCGACGGGGGTTCTC 14756 >seq4017 Length=39095 Score = 86.0 bits (94), Expect = 8e-11 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 1254448 CGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGA 1254507 ||||||| |||| |||||| | ||||| |||||||||| | ||| | |||| ||||| Sbjct 9 CGATGCGCTCGAAGATGTCGCTCACAAAGGAGTTCATGATCAGCATGGCCTTGGAGGAGA 68 Query 1254508 TGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1254544 | || ||| ||||| |||||||| ||||||||||| Sbjct 69 TCCCGGTGTCAGGGTGAACCTGCTTCAGCACCTTGTA 105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6105645786898766