Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maccullochella_20peelii_20[genbank_20GCA_5F002120245.1_202017-05-09] 18,198 sequences; 633,241,041 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq4239 141 8e-29 seq6074 96.9 3e-15 seq3162 95.1 1e-14 >seq4239 Length=33969 Score = 141 bits (156), Expect = 8e-29 Identities = 502/779 (64%), Gaps = 24/779 (3%) Strand=Plus/Plus Query 138479 TCAAGTCGTTTATCAGATATCTGTTTATGACCTGAAATTCACCGGCCAATACTCGACGAA 138538 ||| ||| || | ||||| | || | || |||||| || || | | || | || Sbjct 29898 TCAGGTCTTTGAGCAGATGTGGATTCACGATCTGAAACTCTCCAGAGAGGACCCTGCGGG 29957 Query 138539 CGTAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGG 138598 ||| |||||| ||||| ||| |||| || || ||||| ||||| ||||| || |||| Sbjct 29958 TGTAGATGTTGCTGGTGTAAGCTTCAATAGACTCATTGTTGCCCAGGATCTGGGCGGTGG 30017 Query 138599 TCGCGGTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTG--ATTCG 138656 || || ||||| |||| || ||| |||| | ||||| |||| | || Sbjct 30018 AGGCTGTGGGCATCGGGGCCAGCAGCAGACTGTTCCTCACGCCGTG---CTTGGCAATCT 30074 Query 138657 T-TCCTTGAGCGACGACCAGTCCCACAAATCGCTAGGTTTTTTGTTCCACATATCGTACT 138715 | ||||| ||| | ||||||| || ||| | ||| | || | |||||| ||||||| Sbjct 30075 TCTCCTTCAGCAGCTTCCAGTCCAGCAGGTCGGTGGGTGTCTTCTCCCACATGTCGTACT 30134 Query 138716 GTAACATTCCCAAACTTGCGGGACTGCCTTCGTACGAATCGTATACACCAAACTCTTGCG 138775 | | || || || ||||| ||||||||||| || || |||| ||| || Sbjct 30135 GGAGGATGCCGTTGCTGACGGGAGAGCCTTCGTACGTCTCATAGGGGCCAAGCTCAGCCG 30194 Query 138776 CCAACTCGTTGCTCGCCTCGAGCGCACCATAGTAAATAGTTTCGGCAATCTGCTGATTGA 138835 ||| |||| ||| ||||| || || | ||||| || || || ||||| || | Sbjct 30195 CCAGCTCGCAGCTTGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATCTGAATGTTCA 30254 Query 138836 GCAATCGGGCCTCGGCGCTCTCGTACGGCATGCGGAGCATCGTGAACGCGTCGGCCAGCC 138895 ||| | ||||||| ||| ||| |||| || | | |||| || ||||||| | Sbjct 30255 GCAGCTGAGCCTCGGGGCTTTCGAACGGGTAACGCATGAGGATGAAGGCATCGGCCAAAC 30314 Query 138896 CTTGCACGCCCACTCCGACAGGGCGATGGCGCAGATTTGACGCTTTTGCGGCTTC---GA 138952 | || || || | ||| | || | || ||| || ||| ||| | ||||| | Sbjct 30315 CCTGGACACCGATTCCTATTGGCCTGTGACGCTTGTTGGAC---TTTTCTGCTTCAGGCA 30371 Query 138953 TAGGATAATAGTTTACATCGATGATTTTGTTTAAATTTCGCACGACCACCTTAGTCGTAT 139012 ||||| |||| | || || || |||||||| ||| || | || || ||| || Sbjct 30372 CTGGATAGAAGTTAATCTCAATTATCTTGTTTAAGTTTTTGACTATTACTTTGGTCACAT 30431 Query 139013 GCTTTAATCGTTCAAAATCGTATGTGCCCCCGTTGTCGTCGACGACGTCGACAAATTTGT 139072 | || | | ||| || | || | || | ||||| ||| ||| Sbjct 30432 ACGCTAGTTTCTTAAAGTCAAAAGT------CTGCTCAGGGGTGACGT--ACA----TGT 30479 Query 139073 TGACACAAATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGCTGTATTCGACAA 139132 ||| ||| ||||| | || || || ||||| || ||| || | ||||||| | | Sbjct 30480 TGAGTGCAATGGAGGCCAGATTACAGACAGCCACCTCATCGTGGCTGGTGTATTCAATGA 30539 Query 139133 TTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGT 139192 |||| | || | || || | |||||| || |||| ||| || || ||||| || | || Sbjct 30540 TTTCTGTGCAGAGGTTGCTGCTCTTGATGGTGCCTAGATTCTGCTGGTTGCTCTTCCTGT 30599 Query 139193 TACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTCTCTATAATG 139251 | || || || ||||| ||||| || || || || ||||| || | ||| |||||| Sbjct 30600 TGCACGCGTCCTTGTACAGCATGTATGGCGTACCGGTTTCTGTCTGGGACTCGATAATG 30658 Score = 86.0 bits (94), Expect = 6e-12 Identities = 194/287 (68%), Gaps = 6/287 (2%) Strand=Plus/Plus Query 139723 GTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAGT 139782 || || || || ||| ||||||||||| | ||| | || ||| ||||| || || Sbjct 31133 GTGTCATAAATGCCTTCGATGCTGTCGTCTTTCATGGCGAGCAGGAAGCAGCTGGACAGC 31192 Query 139783 TGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAA-CATTTGTTT 139841 || || || || || || || || ||||| ||||| ||||| || || | | Sbjct 31193 TGTGGCCTGTTGGTTCCTGCGTTGAAGAGCGTAGGGGAGGCGTGGGTGAACCACTTCTCT 31252 Query 139842 CGACATCAATTCGTACGTTTCGATGGCGCTCACAATATCCCTTCCGTGGATACCGACAGA 139901 |||| || | ||| || |||||||| | |||||| || |||||| || |||| Sbjct 31253 -GACAACAGGTTGTAGGTCTCGATGGCTGCGTCGATATCCGTTTTGTGGATCCCAACAGC 31311 Query 139902 GACTCGCATCAGCATATGTTGGATCCGTTCGGCCACCGCGCCCTCGAtttttttCAGATA 139961 |||| ||| ||||| || || ||| |||||||| ||| | ||| || ||| || Sbjct 31312 CACTCTCATGAGCATGTGCTGCGGCCGCTCGGCCACTTTGCCATTGATCTTCAACAGGTA 31371 Query 139962 --ACCGTTCTCTAGGGTCTTGTAGCCAAAGTACCTATAGTTGAAATC 140006 |||| ||| || |||||| |||||||| | | ||| |||||| Sbjct 31372 GGACCG--CTCCAGCGTCTTGAAGCCAAAGAAGTTGTAGGCGAAATC 31416 >seq6074 Length=24291 Score = 96.9 bits (106), Expect = 3e-15 Identities = 147/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || || || || || || ||| | Sbjct 5020 ATGCAGATCTTTGTCAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGC 4961 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || || ||||| ||||| ||||| || || || || || Sbjct 4960 GACACCATTGAGAATGTCAAGGCTAAAATCCAGGACAAGGAAGGCATTCCCCCAGACCAG 4901 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||||||||| ||||||||||| ||| | | | | || || || ||| Sbjct 4900 CAGAGGCTGATCTTTGCCGGCAAACAGCTGGAAGATGGCCGCACCCTCTCTGACTACAAC 4841 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910 || || ||||| || || || || |||| Sbjct 4840 ATCCAGAAGGAGTCCACCCTCCATCTTG 4813 Score = 87.8 bits (96), Expect = 2e-12 Identities = 145/208 (70%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || ||||| || || || || || || || ||| | Sbjct 3957 ATGCAGATCTTCGTCAAGACCCTCACTGGTAAGACCATCACCCTGGAGGTCGAGCCCAGC 3898 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || || ||||| ||||| ||||| || || || || || Sbjct 3897 GACACCATTGAGAATGTCAAGGCTAAAATCCAGGACAAGGAAGGCATTCCCCCAGACCAG 3838 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||||| || || |||||||| ||| | | | | || || || ||| Sbjct 3837 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTACAAC 3778 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910 || || ||||| || || || || |||| Sbjct 3777 ATCCAGAAGGAGTCCACCCTCCATCTTG 3750 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/208 (69%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || || || || || || ||| Sbjct 4792 ATGCAGATCTTTGTCAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTCGAGCCCAGT 4733 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || || ||||| ||||| ||||| || || || || || Sbjct 4732 GACACCATTGAGAATGTCAAGGCTAAAATCCAGGACAAGGAAGGCATTCCCCCAGACCAG 4673 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||||| || || |||||||| ||| | | | | || || || ||| Sbjct 4672 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTACAAC 4613 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910 || || ||||| || || || || |||| Sbjct 4612 ATCCAGAAGGAGTCCACCCTCCATCTTG 4585 >seq3162 Length=48913 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || || || || || | | Sbjct 2816 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTTGAGCCAAGT 2875 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| || || ||||| || ||||| || || Sbjct 2876 GACACTATTGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTCCAGACCAG 2935 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| |||||||||| || || |||||||| ||| | | | | || || || ||| Sbjct 2936 CAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAAC 2995 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| || || || ||| |||| | || | || ||||| Sbjct 2996 ATCCAGAAGGAGTCCACCCTCCACCTGGTCCTCCGTCTCCGTGGAGG 3042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449795259543440