Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maccullochella_20peelii_20[genbank_20GCA_5F002120245.1_202017-05-09] 18,198 sequences; 633,241,041 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq11711 201 2e-45 seq8190 197 2e-44 seq5808 197 2e-44 seq2779 197 2e-44 seq5099 192 9e-43 seq290 185 1e-40 seq7404 105 1e-16 seq1766 95.1 2e-13 seq1332 91.5 2e-12 seq4017 89.7 8e-12 seq1161 86.0 1e-10 >seq11711 Length=2130 Score = 201 bits (222), Expect = 2e-45 Identities = 191/244 (78%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| ||||||||||| ||||| || ||||||||| ||||||| || ||| ||| Sbjct 279 TGTACTTGGTCACGGCCTTGGTGCCCTCAGACACGGCGTGCTTGGCCAGCTCCCCGGGCA 220 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||| ||||||||||||||||| | || | ||| ||| ||||||||| | Sbjct 219 GCAGCAGGCGGACGGCGGTCTGGATCTCCCTGGAGGTGATGGTGGAGCGCTTGTTGTAGT 160 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||||||| |||||| | ||||||| |||| ||||||||||| || ||||||| Sbjct 159 GAGCCAGGCGGGAGGCCTCACCGGCGATGCGCTCGAAAATGTCGTTGACGAAGGAGTTCA 100 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | || ||||||||| ||||||||| ||||| || | |||||||| Sbjct 99 TGATGCCCATGGCCTTAGAGGAGATGCCGGTGTCGGGGTGGACCTGTTTCATCACCTTGT 40 Query 1485710 AAAC 1485713 | || Sbjct 39 AGAC 36 >seq8190 Length=11411 Score = 197 bits (218), Expect = 2e-44 Identities = 190/244 (78%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| ||||||||||| ||||| || ||||||||| ||||||| || ||| ||| Sbjct 777 TGTACTTGGTCACGGCCTTGGTGCCCTCAGACACGGCGTGCTTGGCCAGCTCCCCGGGCA 836 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||| ||||||||||||||||| | || | ||| ||| ||||||||| | Sbjct 837 GCAGCAGGCGGACGGCGGTCTGGATCTCCCTGGAGGTGATGGTGGAGCGCTTGTTGTAGT 896 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||| ||| || ||| | ||||||| |||| |||||| | ||||| ||||||| Sbjct 897 GAGCCAGACGGGAGGACTCACCGGCGATGCGCTCGAAGATGTCGCTCACAAAGGAGTTCA 956 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 ||||| ||| | ||| |||||| || ||||||||| |||||||| |||||||| | Sbjct 957 TGATCAGCATGGCCTTGGAGGAGATCCCGGTGTCGGGGTGGACCTGCTTCAGCACCTTAT 1016 Query 1485710 AAAC 1485713 | || Sbjct 1017 ACAC 1020 >seq5808 Length=40005 Score = 197 bits (218), Expect = 2e-44 Identities = 190/244 (78%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| ||||||||||| ||||| || ||||||||| ||||||| || ||| ||| Sbjct 34374 TGTACTTGGTCACGGCCTTGGTGCCCTCAGACACGGCGTGCTTGGCCAGCTCCCCGGGCA 34433 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||| ||||||||||||||||| | || | ||| ||| ||||||||| | Sbjct 34434 GCAGCAGGCGGACGGCGGTCTGGATCTCCCTGGAGGTGATGGTGGAGCGCTTGTTGTAGT 34493 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||| ||| || ||| | ||||||| |||| |||||| | ||||| ||||||| Sbjct 34494 GAGCCAGACGGGAGGACTCACCGGCGATGCGCTCGAAGATGTCGCTCACAAAGGAGTTCA 34553 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 ||||| ||| | ||| |||||| || ||||||||| ||||| || |||||||||| Sbjct 34554 TGATCAGCATGGCCTTGGAGGAGATCCCGGTGTCGGGGTGGACCTGTTTCAGCACCTTGT 34613 Query 1485710 AAAC 1485713 | || Sbjct 34614 ACAC 34617 >seq2779 Length=54908 Score = 197 bits (218), Expect = 2e-44 Identities = 190/244 (78%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| ||||||||||| ||||| || ||||||||| ||||||| || ||| ||| Sbjct 53803 TGTACTTGGTCACGGCCTTGGTGCCCTCAGACACGGCGTGCTTGGCCAGCTCCCCGGGCA 53862 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||| ||||||||||||||||| | || | ||| ||| |||||||| | Sbjct 53863 GCAGCAGGCGGACGGCGGTCTGGATCTCCCTGGAGGTGATGGTGGAACGCTTGTTGTAGT 53922 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||||||| || ||| | ||||||| |||| |||||| | ||||| ||||||| Sbjct 53923 GAGCCAGGCGGGAGGACTCACCGGCGATGCGCTCGAAGATGTCGCTCACAAAGGAGTTCA 53982 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| ||||||||| |||||||| |||||||| | Sbjct 53983 TGATGCCCATGGCCTTGGAGGAGATGCCGGTGTCGGGGTGGACCTGCTTCAGCACCTTAT 54042 Query 1485710 AAAC 1485713 | || Sbjct 54043 ACAC 54046 >seq5099 Length=50958 Score = 192 bits (212), Expect = 9e-43 Identities = 189/244 (77%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| ||||||||||| ||||| || ||||||||| ||||||| || ||| ||| Sbjct 49563 TGTACTTGGTCACGGCCTTGGTGCCCTCAGACACGGCGTGCTTGGCCAGCTCCCCGGGCA 49504 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||| ||||||||||||||||| | || | ||| ||| ||||||||| | Sbjct 49503 GCAGCAGGCGGACGGCGGTCTGGATCTCCCTGGAGGTGATGGTGGAGCGCTTGTTGTAGT 49444 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||| ||| || ||| | ||||||| |||| |||||| | ||||| ||||||| Sbjct 49443 GAGCCAGACGGGAGGACTCACCGGCGATGCGCTCGAAGATGTCGCTCACAAAGGAGTTCA 49384 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| |||||| || ||||||||| ||||| || |||||||||| Sbjct 49383 TGATGCCCATGGCCTTGGAGGAGATCCCGGTGTCGGGGTGGACCTGTTTCAGCACCTTGT 49324 Query 1485710 AAAC 1485713 | || Sbjct 49323 ATAC 49320 >seq290 Length=227343 Score = 185 bits (204), Expect = 1e-40 Identities = 188/245 (77%), Gaps = 0/245 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| ||||||||||| || || || ||||| ||| ||||||| |||||| ||| Sbjct 28383 TGTACTTGGTCACGGCCTTGGTGCCTTCGGACACGGCATGCTTGGCCAGCTCGCCGGGCA 28442 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||| ||||| ||||||||||| | || | ||| ||| | |||||| | Sbjct 28443 GCAGCAGGCGGACGGCAGTCTGGATCTCCCTGGAGGTGATGGTGGATCTCTTGTTGTAGT 28502 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| || || ||||||| |||| || ||||||||||||||||||| Sbjct 28503 GCGCCAGGCGCGACGCTTCCCCAGCGATGCGCTCGAAGATATCGTTGACAAACGAGTTCA 28562 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||| ||| ||| |||||||||||||| |||||||||| Sbjct 28563 TGATGCCCATGGCCTTGGATGAGATCCCCGTGTCTGGGTGCACCTGCTTCAGCACCTTGT 28622 Query 1485710 AAACA 1485714 | ||| Sbjct 28623 AGACA 28627 >seq7404 Length=21843 Score = 105 bits (116), Expect = 1e-16 Identities = 91/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 796303 ACCTCCTCGGCGGTCCAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGG 796362 |||||||| |||||||| || |||||||||||||| |||||||||| ||| || ||| Sbjct 14853 ACCTCCTCTGCGGTCCAGAAAGAGGCCTCGGCCTTCTTGTACATCTGCCAGATGTCGTGG 14794 Query 796363 TAGCGGATGGGGAACAGAACAAAGCGATTGGGGTTCTCGCGTAGCAGCGGCTC 796415 || |||||||||| | || |||||| ||||||||| ||||||||||| Sbjct 14793 TACTGGATGGGGAAGATGACGAAGCGACGGGGGTTCTCCTTCAGCAGCGGCTC 14741 Score = 87.8 bits (96), Expect = 3e-11 Identities = 74/91 (81%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 794576 TCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGT 794635 |||| | || ||||||| |||||||| ||||||||| ||| ||||||||||||||| Sbjct 15816 TCTCTGCGGGCTCCTTGATGTAGGTGTTGATGAGGAGGCTGTACATCTCTGAGTGGATGT 15757 Query 794636 TTTCGATGGCGATCTGGAAGCCATAAAAGCA 794666 | || |||||||||||||| || || || || Sbjct 15756 TCTCCATGGCGATCTGGAAACCGTAGAAACA 15726 >seq1766 Length=186113 Score = 95.1 bits (104), Expect = 2e-13 Identities = 158/226 (70%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| || ||||| ||||| || || ||||| | ||||| || ||| ||| Sbjct 168631 TGTACTTGGTGACAGCTTTGGTGCCCTCAGACACTGCGTGTTTAGCCAGCTCCCCGGGCA 168690 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| | ||| || || || | ||| | | || ||| ||| ||| || || || | Sbjct 168691 GCAGCAGTCTCACTGCAGTTTGCACCTCCCTGCTGGTGATGGTGGAGCGTTTATT-GTAC 168749 Query 1485590 -GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 | ||||| ||| ||||| ||| | || | || | || ||| || || || |||||| Sbjct 168750 TGAGCCAGCCGGGACGCCTCTGTGGCAATCCTCTCAAACAGGTCATTCACGAAGGAGTTC 168809 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCT 1485694 ||||| ||| | | || | || || ||| ||| || || |||| Sbjct 168810 ATGATGCTCATAGCTCTGCTTGAAATCCCCGTGTCCGGATGAACCT 168855 >seq1332 Length=261903 Score = 91.5 bits (100), Expect = 2e-12 Identities = 169/248 (68%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| ||||||||||| ||||| || ||||| || | | ||| || | | ||| Sbjct 62284 TGTACTTGGTCACGGCCTTGGTGCCCTCAGACGCGGCGAGCTTAGACAGCTCACTGGGCA 62343 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||||| ||||||||||||||||| | || | ||| ||| ||||||||| | Sbjct 62344 GCAGCAGGCAGACGGCGGTCTGGATCTCCCTGGAGGTGATGGTGGAGCGCTTGTTGCAGT 62403 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||| | ||||| | || || | | | || || || || |||| Sbjct 62404 GGACCAAATGTGAAGCCTCACCGGTGACACGCACAAAAACATCATTCTTGAAGGACTTCA 62463 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| |||||| || | || ||||| |||||||| | ||| | || Sbjct 62464 TGATGCCCATGGCCTTGGAGGAGATACCGATATCTGGGTGGACCTGCTTCATCACATAGT 62523 Query 1485710 AAACAAAG 1485717 ||||| || Sbjct 62524 AAACATAG 62531 >seq4017 Length=39095 Score = 89.7 bits (98), Expect = 8e-12 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 1485592 GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATG 1485651 ||||| ||| || ||| | ||||||| |||| |||||| | ||||| ||||||||| Sbjct 307 GCCAGACGGGAGGACTCACCGGCGATGCGCTCGAAGATGTCGCTCACAAAGGAGTTCATG 366 Query 1485652 ATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAA 1485711 ||| ||| | ||| |||||| || ||||||||| |||||||| |||||||| || Sbjct 367 ATCAGCATGGCCTTGGAGGAGATCCCGGTGTCGGGGTGGACCTGCTTCAGCACCTTATAC 426 Query 1485712 AC 1485713 || Sbjct 427 AC 428 Score = 86.0 bits (94), Expect = 1e-10 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 1485614 CGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCGATTTGTTGGAGA 1485673 ||||||| |||| |||||| | ||||| |||||||||||| ||| | ||| ||||| Sbjct 9 CGATGCGCTCGAAGATGTCGCTCACAAAGGAGTTCATGATCAGCATGGCCTTGGAGGAGA 68 Query 1485674 TGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAAAC 1485713 | || ||| ||||| |||||||| ||||||||||| || Sbjct 69 TCCCGGTGTCAGGGTGAACCTGCTTCAGCACCTTGTACAC 108 >seq1161 Length=118247 Score = 86.0 bits (94), Expect = 1e-10 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 2071579 ACGACCTCGGTGCACAGGTTGGCCGACATCGTGGTGCCCAGGTTCTGCTGGTTGCTGGTC 2071638 |||| ||| |||||||| ||| || | |||||||||| |||||||||||||| || Sbjct 53935 ACGATCTCCGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTC 53876 Query 2071639 AGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTG 2071688 |||| ||||||||||| |||||||| |||| ||| || || |||| Sbjct 53875 CTGTTGCAGGCGTCCTTGTAGAGCATGTATGGCGTACCGGTTTCTGTCTG 53826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7914310595738922