Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maccullochella_20peelii_20[genbank_20GCA_5F002120245.1_202017-05-09] 18,198 sequences; 633,241,041 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq6074 161 6e-35 seq3162 138 7e-28 >seq6074 Length=24291 Score = 161 bits (178), Expect = 6e-35 Identities = 175/230 (76%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||||| | |||||| || || | |||| ||||||||| ||||| ||||| || Sbjct 4566 CCACCCCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 4625 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| |||| |||| ||||| ||||| || || |||||||| | ||||||||| | || Sbjct 4626 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGA 4685 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928 | || |||||||| | ||||| ||||| || || || | ||| ||| ||||| Sbjct 4686 ATGCCTTCCTTGTCCTGGATTTTAGCCTTGAC--ATTCTCAATGGTGTCACTGGGCTCGA 4743 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 | || | ||| |||||||| || ||||||||||| ||||||||||||||| Sbjct 4744 CCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCATG 4793 Score = 152 bits (168), Expect = 3e-32 Identities = 173/230 (75%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||||| | |||||| || || | |||| ||||||||| ||||| ||||| || Sbjct 3731 CCACCCCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 3790 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| |||| |||| ||||| ||||| || || |||||||| | ||||||||| | || Sbjct 3791 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGA 3850 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928 | || |||||||| | ||||| ||||| || || || | || ||| ||||| Sbjct 3851 ATGCCTTCCTTGTCCTGGATTTTAGCCTTGAC--ATTCTCAATGGTGTCGCTGGGCTCGA 3908 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 | || | ||| |||||||| || ||||||||||| || |||||||||||| Sbjct 3909 CCTCCAGGGTGATGGTCTTACCAGTGAGGGTCTTGACGAAGATCTGCATG 3958 Score = 152 bits (168), Expect = 3e-32 Identities = 173/230 (75%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||||| | |||||| || || | |||| ||||||||| ||||| ||||| || Sbjct 4794 CCACCCCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 4853 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| |||| |||| ||||| || || ||||| |||||||| | ||||||||| | || Sbjct 4854 AGGGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGA 4913 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928 | || |||||||| | ||||| ||||| || || || | || ||| ||| | Sbjct 4914 ATGCCTTCCTTGTCCTGGATTTTAGCCTTGAC--ATTCTCAATGGTGTCGCTGGGCTCCA 4971 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 | || | ||| |||||||| || ||||||||||| ||||||||||||||| Sbjct 4972 CCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCATG 5021 >seq3162 Length=48913 Score = 138 bits (152), Expect = 7e-28 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 34748 TTTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCC 34807 |||||||| | | | ||||||||||| | |||| ||||||||| ||||| ||||| Sbjct 3045 TTTCCTCCACGGAGACGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG 2986 Query 34808 GATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGC 34867 || ||| |||| |||| ||||| ||||| || || |||||||| || ||||||||| | Sbjct 2985 GAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCTGGA 2926 Query 34868 GGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCG 34927 || | || ||||| || | || || || ||| | || | ||| | | ||| Sbjct 2925 GGGATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCAATAGTGTCACTTGGCTCA 2866 Query 34928 ACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || || | ||| |||||||| || || |||||||| || |||||||||||| Sbjct 2865 ACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATG 2815 Score = 134 bits (148), Expect = 9e-27 Identities = 169/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 |||||||||| | ||||||||||| | ||| || ||||| ||||| ||||| || Sbjct 2814 CCTCCCCTCAGACGGAGGACCAGGTGGAGTGTGGATTCTTTCTGGATGTTGTAGTCGGAG 2755 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| |||| |||| ||||| ||||| || || |||||||| || ||||||||| | || Sbjct 2754 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCTGGAGGG 2695 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928 | || ||||| || | || || || || || || || | ||| ||| ||| | Sbjct 2694 ATGCCTTCCTTATCCTGGATCTTGGCCTTCAC--ATTCTCAATAGTGTCACTGGGCTCAA 2637 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 | || | ||| |||||||| || || |||||||| ||||| ||||||||| Sbjct 2636 CCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAAATCTGCATG 2587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325620565204562