Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maccullochella_20peelii_20[genbank_20GCA_5F002120245.1_202017-05-09] 18,198 sequences; 633,241,041 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq2667 187 2e-41 seq2860 116 3e-20 seq1043 107 1e-17 >seq2667 Length=57246 Score = 187 bits (206), Expect = 2e-41 Identities = 927/1462 (63%), Gaps = 18/1462 (1%) Strand=Plus/Plus Query 281426 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 281485 |||| |||||| ||||| ||||||||||| | || || || || || | || || || Sbjct 19304 GCAGACACATTCAGAATGCCATTGGCATCGATGTCGAAAGTTACCTCCACCTGTGGTACA 19363 Query 281486 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 281545 |||| ||||||| ||||| ||| | | ||| ||||||| || || || || Sbjct 19364 CCTCGGGGAGCAGGAGGGATACCTGTGAGCTCAAACTTTCCCAGGAGGTTGTTGTCCTTG 19423 Query 281546 GTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAA 281605 || | || |||||||| | | || || || ||| || ||||| ||||| Sbjct 19424 GTCATGGCTCTCTCACCCTCATACACCTGAATCAGCACACCAGGCTGGTTATCCGAATAT 19483 Query 281606 GTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGT 281664 || | || | ||||| | | || || || || || |||| | || | | || Sbjct 19484 GTGGAGAAGA-TCTGGGTCTGCTTGTTGGGGATGGTGGTATTTCGTTTGATTAGAGGCGT 19542 Query 281665 CATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAAT 281724 ||||| ||||| || || || | || ||||| || |||| || || | || | | Sbjct 19543 CATAACTCCACCTGCAGTCTCAATGCCCAGAGACAGGGGAGCCACGTCCAGCAGCAGCAG 19602 Query 281725 ATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATA 281784 || ||| | ||||| ||| | ||| | || ||||| || || | || ||||| || Sbjct 19603 ATCTTGGACGTTTTCTGAAGTGTCACCCATGAGGATAGCAGCCTGGACTGCTGCACCGTA 19662 Query 281785 TGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAAT-TTG 281843 || ||||||||||| || || | | | || |||| | | ||||| ||||| | || Sbjct 19663 GGCCACAGCTTCATCTGGGTTGATGCTCTTGTTCAGTTCTCTGCCATTAAAAAAGTCCTG 19722 Query 281844 AAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCA 281903 |||| || | | || ||||| | | || || ||||| | || || ||||| | Sbjct 19723 CAAGAGCTTCT-GGATTTTGGGAATTCTTGTGGAGCCACCAACCAGGACGATATCATGGA 19781 Query 281904 CCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTC 281963 || || |||||||| || | ||| | | || ||||| ||||| || ||| Sbjct 19782 TCTTGGACTTATCCAGCTTGGCATCTTGCAGGGCCTTCTCAACTGGTTCCAGTGTTCCTC 19841 Query 281964 TAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TC 282021 | || | || || | || || || || || || || || | || || || Sbjct 19842 TGAAGAGCTCAGAGTTTAACTCCTCAAAGCGTGCCCTTGT--GATGGATGTGTAGAAGTC 19899 Query 282022 AATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACG 282081 ||| || || |||| ||| || | ||||| ||| || || || || || | | Sbjct 19900 AATGCCCTCAAACAGAGAGTCGATCTCAATGCTAGCCTGGGTGCTGGAGGACAGGGTCCT 19959 Query 282082 TTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGA--TTGATTCAAA 282139 || || | ||||| ||||| | ||||| | | ||| | || | ||| | | Sbjct 19960 CTTCGCTCTCTCACAAGCTGTACGCAGTCTCCTCACTGCTCT--CTTATTTTGGCTGATG 20017 Query 282140 TCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAA 282199 || | || | |||||| || || || || ||| | | || | || || ||||| Sbjct 20018 TCCTTCTTGTGTTTTCTTTTAAATTCCTCTACAAAGTGGTTGACCATCCGGTTGTCAAAG 20077 Query 282200 TCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCA 282259 || || || || | | || | ||||| || | | | || | || | || || ||| Sbjct 20078 TCCTCCCCACCAAGGTGTGTGTCTCCTGCGGTGGATTTCACCTCAAAGATGCCGTCCTCA 20137 Query 282260 AGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATT 282319 | | || || | || ||| ||| || ||||| | |||||| || || ||||| Sbjct 20138 ATGGTCAGAATGGACACGTCAAAGGTGCCTCCACCGAGATCAAAGATGAGCACATTGCGC 20197 Query 282320 TCTTTGTCTTGGTT---TTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTA 282376 || | |||| || |||||| || ||||| || | || || || || || || || Sbjct 20198 TC-TCCTCTT--TTACCTTTATCCAGGCCATAGGCTATGGCTGCTGCTGTGGGCTCGTTG 20254 Query 282377 ATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGT 282436 || || |||| ||||| || |||| || || || || || |||||||| || || Sbjct 20255 ATGATCCTCAGGACATTCAGTCCAGAGATCACCCCGGCGTCCTTGGTGGCTTGCCTCTGA 20314 Query 282437 GAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAA 282496 || || || ||||| || ||||| || || || |||| || || | ||| | || Sbjct 20315 GAGTCATTGAAATAAGCTGGAACTGTGATGACTGCATTTGACACCCTCTGTCCCAGGTAG 20374 Query 282497 GCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATAT 282556 || || | | ||||||||| | | ||| || || |||| ||||| | | Sbjct 20375 GCCTCAGCGATCTCCTTCATTTTAACCAGGACCATGGAGGAGATTTCCTCTGGGTAGAAG 20434 Query 282557 TGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACT 282616 ||||| || || ||| || | | | || || | || | || || Sbjct 20435 GCCTTGGTCTCCCCTTTATACTCCACCTGGACTTTGGGCTTTCCATTGTCACTGATCACC 20494 Query 282617 TTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATT 282676 || || ||||| |||||| || || || ||| | || ||||| | ||| |||||| Sbjct 20495 TTGAAAGGCCAGAGTTTCATGTCGGACTGGACAATGGCATCGTTAAACTTTCTCCCAATT 20554 Query 282677 AATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCA 282736 | ||||| |||||||| || || ||||| || || | ||| | || | ||||| || Sbjct 20555 AGCCGTTTGGCATCAAAGATTGTGTTGGTGGGGTTCATAGCAACCTGGTTCTTGGCACCA 20614 Query 282737 TCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCT 282796 |||||||| || ||||| || ||||| | ||||| ||||| || | || || Sbjct 20615 TCTCCAATGAGCCTCTCTGTGTCGGTAAAGGCCACATAGCTGGGAGTGGTCCTGTTGCCC 20674 Query 282797 TGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTT 282856 || || || || || || |||||||| |||| || | | || |||||| | | || Sbjct 20675 TGGTCGTTGGCGATGATCTCAACTTTGCCATGCTGGAAAATCCCAACACAAGAATAGGTG 20734 Query 282857 GTTCCTAAATCAATACCAATAG 282878 || || | |||||| ||||||| Sbjct 20735 GTGCCCAGATCAATGCCAATAG 20756 >seq2860 Length=62146 Score = 116 bits (128), Expect = 3e-20 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 ||||| || || ||||| |||| || |||||||| || ||||| || || | || ||| Sbjct 60688 TTTTTGTCCAGGCCATAAGCAATGGCTGCAGCAGTGGGCTCATTGATGATGCGCAGCACA 60747 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 ||||| |||||||| |||| |||||||| |||||||| | || || || || || || Sbjct 60748 TTAAGCCCAGCAATGGTTCCAGCATCTTTGGTGGCTTGACGCTGGGAGTCATTGAAGTAA 60807 Query 282452 GCAGGAACAGTAATAACGGCAT 282473 ||||||||||| ||||| |||| Sbjct 60808 GCAGGAACAGTGATAACTGCAT 60829 Score = 86.0 bits (94), Expect = 5e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 281426 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 281485 |||| |||||| ||||| ||||||||||| | ||||| || || ||||| |||||||| Sbjct 59446 GCAGACACATTGAGAATGCCATTGGCATCTATGTCAAAGGTCACCTCAATCTGAGGGACA 59505 Query 281486 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 281545 ||||| |||||||||| || | || | ||| | ||||| ||||||| || || Sbjct 59506 CCTCTGGGAGCAGGTGGAATACTGGTCAGCTCAAACTTGCCCAGGATATTATTGTCCTTG 59565 Query 281546 GT 281547 || Sbjct 59566 GT 59567 >seq1043 Length=203059 Score = 107 bits (118), Expect = 1e-17 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 ||||| || || ||||| |||| ||||||||||||||||||||| || || | | ||| Sbjct 13933 TTTTTGTCCAGGCCATAAGCAATAGCAGCAGCAGTTGGTTCATTGATGATACGAAGGACA 13992 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 ||||| |||| ||| | ||||| ||||| ||||| || | || || || || || || Sbjct 13993 TTAAGGCCAGAAATGGTCCCTGCGTCTTTGGTGGCCTGGCGCTGAGAGTCATTGAAGTAG 14052 Query 282452 GCAGGAACAGTAATAACGGCATCTGTTAC 282480 ||||| ||||| | || || | |||||| Sbjct 14053 GCAGGCACAGTCACGACAGCGTTTGTTAC 14081 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3739736955104748