Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maccullochella_20peelii_20[genbank_20GCA_5F002120245.1_202017-05-09] 18,198 sequences; 633,241,041 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq4239 219 4e-52 seq3162 136 4e-27 seq6074 125 7e-24 seq1161 113 4e-20 seq356 91.5 1e-13 >seq4239 Length=33969 Score = 219 bits (242), Expect = 4e-52 Identities = 993/1551 (64%), Gaps = 56/1551 (4%) Strand=Plus/Plus Query 148237 TCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCA 148296 ||||||| | || ||||| ||||||| | ||||||||| || | ||| || | || Sbjct 29898 TCAGGTCTTTGAGCAGATGTGGATTCACGATCTGAAACTCTCCAGAGAGGACCCTGCGGG 29957 Query 148297 GATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCG 148356 || | |||||| || | | ||||| ||||| |||||||||| ||||| ||||| | Sbjct 29958 TGTAGATGTTGCTGGTGTAAGCTTCAATAGACTCATTGTTGCCCAGGATCTGGGCGGTGG 30017 Query 148357 TTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGC 148416 || |||||||| || | |||||| ||| | || ||| | || || || Sbjct 30018 AGGCTGTGGGCATCGGGGCCAGCAGCAGACTGTTCCTCACGCCGTGCTTGGCAATCTTCT 30077 Query 148417 GCTTCAGAGCCGCCCAGTCC--CAGAGCGGCGACGGTGTCACGTTCCACATGTCGTACTG 148474 |||||| | ||||||| ||| ||| | |||||| | ||||||||||||||| Sbjct 30078 CCTTCAGCAGCTTCCAGTCCAGCAGGTCGGTG--GGTGTCTTCTCCCACATGTCGTACTG 30135 Query 148475 CAGAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGC 148534 || |||||| ||| |||| ||| ||||||| || || || || | ||||| Sbjct 30136 GAGGATGCCGTTGCTGACGGGAGAGCCTTCGTACGTCTCATAGGGGCCAAGCTCAGCCGC 30195 Query 148535 CAGTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAG 148594 ||| |||||||| ||||| || ||| ||||||| || ||||| || || |||| || Sbjct 30196 CAGCTCGCAGCTTGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATCTGAATGTTCAG 30255 Query 148595 CAGCGCCGCCGACTCGCTTTCGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCC 148654 |||| ||| ||||||| |||| ||||| | | || || ||||| | || Sbjct 30256 CAGCTGAGCCTCGGGGCTTTCGAACGGGTAACGCATGAGGATGAAGGCATCGGCCAAACC 30315 Query 148655 CTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCG-AGCG 148713 ||| || || | || || |||| ||| ||||||| || || | | | Sbjct 30316 CTGGACACCGATTCCTATTGGCCTGTGACGCTTGTTGGACTTTTCTGC-TTCAGGCACTG 30374 Query 148714 GATAGTGGTTGCGGTCGATGATCTTG-TCAAGATTGCGCACCACCACCTTTGTAATTCTG 148772 ||||| ||| || || |||||| | ||| || | || | || || || | | Sbjct 30375 GATAGAAGTTAATCTCAATTATCTTGTTTAAGTTTTTG-ACTATTACTTTGGTCA-CATA 30432 Query 148773 CGC-AG------CAATTCAAAATCGTACTTGTCATCTACGATGCATCGGTTCACGGCGAT 148825 ||| || || |||||| || || ||| || | | ||| | || || Sbjct 30433 CGCTAGTTTCTTAAAGTCAAAA--GT-CTGCTCAGGGGTGACGTACATGTTGAGTGCAAT 30489 Query 148826 AGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCA 148885 ||||| ||||| || || ||| |||||| || | |||| || | ||| || | ||| Sbjct 30490 GGAGGCCAGATTACAGACAGCCACCTCATCGTGGCTGGTGTATTCAATGATTTCTGTGCA 30549 Query 148886 CAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTC 148945 || ||||||| ||||| ||| | |||| || |||||||| |||||||||||||| Sbjct 30550 GAGGTTGCTGCTCTTGATGGTGCCTAGATTCTGCTGGTTGCTCTTCCTGTTGCACGCGTC 30609 Query 148946 CTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTATGAACCGATGCAG 149005 ||||||||||||||| || || ||||| ||| | || | ||| | ||| Sbjct 30610 CTTGTACAGCATGTATGGCGTACCGGTTTCTGTCTGGGACTCGATAATGGCGTGCCACAG 30669 Query 149006 GTCCTGCGCGCGCACTTGCTGCTCGTAGCGACCCTCCTGCTCGTATAAAGTATACAGCCG 149065 | ||| || ||| ||| | | ||||||| ||| ||| ||||| ||| Sbjct 30670 CTGCTGAGCCTTCACCAAGCGCTTGACCCTCCCCTCCTTCTCATATGTGGTATAGAGCTT 30729 Query 149066 CTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCGA 149125 ||| ||| |||| || |||| ||||| || || ||||||| || ||||| || || Sbjct 30730 CTCAAACTCCTCCCCCCAGCACTCGTCCAGCCCCGGGCACTCACTTGGACACATCAGAGA 30789 Query 149126 CCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACAT 149185 ||| | || | ||| | |||||| ||||| ||||| | ||| | ||||| | Sbjct 30790 CCAGTCTTGGTTGCTTTCCACTCTCTTCATGAACAGGTCGGGGATCCACATGGCGTAGAA 30849 Query 149186 GAGGTCGC--GCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGAGCACGCTG 149243 || || | || | ||| || || || |||| ||| | || | | Sbjct 30850 AAGATCTCTGGCTCTCTGC--TCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAGTCA 30907 Query 149244 AATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCC------CTTGCGCTTG 149297 || | || |||||| ||||| | ||||| || | || || |||| ||| Sbjct 30908 AACACATCAAAGTGCCAGGGCTCCAGGTACATGGCAAAGGCTCCGGGCCTCTTG---TTG 30964 Query 149298 CCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCA 149357 || ||||||||||| | || | |||||||| | |||| | ||| || | | ||| Sbjct 30965 CCACCCTGGTCGACATAACGTGCTGTGTTGTTATAAACTCTCAGCATGGGGACTAGCCCA 31024 Query 149358 CTGGCAGTGCCGTTAGTAGAGCTAATGCGACTGCCGCGCGCTCGCACTTTG-TGCACGTT 149416 ||| ||||||| || || | |||| || || | | | || |||| | | Sbjct 31025 TTGGAGTTGCCGTTTGT---GCCA--GCGA-TGTAGCTCCCCGTTGATCTGATGCA-GCT 31077 Query 149417 G------ACGCCGATGCCGCCGCCGTACTTTGAGATGGCCGCGCAGTCGCCGAGCGTCGA 149470 | |||||||| || || | ||| |||||| || || | ||||| Sbjct 31078 GACCGCCACGCCGATTCCTCCAGCTGCCTTGGAGATGAGGGCACATTGCTTCAGCGTGTC 31137 Query 149471 GTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGG 149530 || ||||| |||||||||||| ||||||| ||||| ||||| | ||| || || Sbjct 31138 ATAAATGCCTTCGATGCTGTCGTCTTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGG 31197 Query 149531 AAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCTGGCTCAT 149590 || || || ||| | || ||| |||||| || || | |||| || Sbjct 31198 CCTGTTGGTTCCTGCGTTGAAGAGCGTAGGGGAGGCGTGGGTGAACCACTTCTCTGACAA 31257 Query 149591 CATCTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCG 149650 || | ||| | ||||| | ||| || || ||||| || | || || | Sbjct 31258 CAGGTTGTAGGTCTCGATGGCTGCGTCGATATCCGTTTTGTGGATCCCAACAGCCACTCT 31317 Query 149651 CATCAGCATATGCTGCGGTCGCTCCGCCACTTTGTTTCCA---ATTTTGAGCAAGTAG-- 149705 ||| ||||| |||||||| ||||| ||||||||| ||| || || | || |||| Sbjct 31318 CATGAGCATGTGCTGCGGCCGCTCGGCCACTTTG---CCATTGATCTTCAACAGGTAGGA 31374 Query 149706 CCGTTTTCTAGTGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCGGCCG 149756 ||| || || |||||| |||||||| | |||||| | || || ||| || Sbjct 31375 CCG--CTCCAGCGTCTTGAAGCCAAAGAAGTTGTAGGCGAAATCTCGGTCG 31423 >seq3162 Length=48913 Score = 136 bits (150), Expect = 4e-27 Identities = 153/202 (76%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 ||||| |||||||| || ||||| ||| | ||| | | | || || ||||||||||| Sbjct 2784 GTGGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCA-TCTTCCAGCTGCTTGCC 2726 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || || ||||||||||| ||||||||||||||||| || |||||| ||| Sbjct 2725 AGCAAAGATCAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTATCCTGGATCTTGGCCTT 2666 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||||| ||||| ||||||| || || | ||||| ||| ||||| ||||| || Sbjct 2665 CACATTCTCAATAGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTCAGGGT 2606 Query 133643 TTTTACGAAAATCTGCATGGCT 133664 || || |||||||||||| || Sbjct 2605 CTTCACAAAAATCTGCATGCCT 2584 Score = 134 bits (148), Expect = 1e-26 Identities = 153/203 (75%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| ||| | ||| | | | || || |||||||||| Sbjct 3013 GGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCA-TCTTCCAGCTGCTTGC 2955 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || || ||||||||||| ||||||||||||||||| || |||||| || Sbjct 2954 CAGCAAAGATCAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTATCCTGGATCTTGGCCT 2895 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||||| ||||| | ||||| || || | ||||| ||| ||||| ||||| | Sbjct 2894 TCACGTTCTCAATAGTGTCACTTGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTCAGGG 2835 Query 133642 TTTTTACGAAAATCTGCATGGCT 133664 | || ||||| ||||||||| || Sbjct 2834 TCTTCACGAAGATCTGCATGCCT 2812 Score = 123 bits (136), Expect = 2e-23 Identities = 152/205 (74%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||||||||| ||||| || ||||| ||| | ||| | | | || || |||| Sbjct 2563 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCA-TCTTCCAGCT 2505 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| || | || || ||||||||||| ||||||||||| ||||| || ||||| Sbjct 2504 GCTTGCCAGCAAAGATCAGACGCTGCTGGTCTGGAGGGATGCCCTCCTTATCCTGGATCT 2445 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | |||| | |||| ||||| ||||||| || || | |||| ||| ||||| | Sbjct 2444 TGGCTTTGACATTTTCAATGGTGTCACTGGGCTCAACCTCCAAAGTGATGGTCTTGCCAG 2385 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 |||| || || || ||||||||||| Sbjct 2384 TCAGGGTCTTCACAAAAATCTGCAT 2360 >seq6074 Length=24291 Score = 125 bits (138), Expect = 7e-24 Identities = 153/206 (74%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||||||||| ||||| || ||||| || | ||| | | | || || |||| Sbjct 3754 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCA-TCTTCCAGCT 3812 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| || | || |||| ||||||||| || || |||||||||||||| ||| | Sbjct 3813 GCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATTT 3872 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||||| | ||||| |||||| ||||||| || || | ||||| ||| || || | Sbjct 3873 TAGCCTTGACATTCTCAATGGTGTCGCTGGGCTCGACCTCCAGGGTGATGGTCTTACCAG 3932 Query 133636 TCAGAGTTTTTACGAAAATCTGCATG 133661 | || || || ||||| ||||||||| Sbjct 3933 TGAGGGTCTTGACGAAGATCTGCATG 3958 Score = 125 bits (138), Expect = 7e-24 Identities = 153/206 (74%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||||||||| ||||| || ||||| || | ||| | | | || || |||| Sbjct 4817 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCA-TCTTCCAGCT 4875 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 | ||||| || | || |||| ||||||||| || || |||||||||||||| ||| | Sbjct 4876 GTTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATTT 4935 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||||| | ||||| |||||| |||||||||| || | ||||| ||| ||||| | Sbjct 4936 TAGCCTTGACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAG 4995 Query 133636 TCAGAGTTTTTACGAAAATCTGCATG 133661 | || || || || || ||||||||| Sbjct 4996 TGAGGGTCTTGACAAAGATCTGCATG 5021 Score = 122 bits (134), Expect = 8e-23 Identities = 152/206 (74%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||||||||| ||||| || ||||| || | ||| | | | || || |||| Sbjct 4589 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCA-TCTTCCAGCT 4647 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| || | || |||| ||||||||| || || |||||||||||||| ||| | Sbjct 4648 GCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATTT 4707 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||||| | ||||| ||||| ||||||| || || | ||||| ||| ||||| | Sbjct 4708 TAGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTCTTGCCAG 4767 Query 133636 TCAGAGTTTTTACGAAAATCTGCATG 133661 | || || || || || ||||||||| Sbjct 4768 TGAGGGTCTTGACAAAGATCTGCATG 4793 >seq1161 Length=118247 Score = 113 bits (124), Expect = 4e-20 Identities = 85/100 (85%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 148864 TGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGAT 148923 |||||||||||||||| | ||||||||||||| ||||||| ||||| |||| || | Sbjct 53943 TGTACTCTACGATCTCCGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGGT 53884 Query 148924 TGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGG 148963 ||||||| |||||||| ||||||||||| |||||||| || Sbjct 53883 TGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGG 53844 >seq356 Length=191405 Score = 91.5 bits (100), Expect = 1e-13 Identities = 121/166 (73%), Gaps = 2/166 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||||||||| ||||| || ||||| || | ||| | | | || || |||| Sbjct 11427 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCA-TCTTCCAGCT 11369 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| || | || |||| ||||||||| || || |||||||||||||| ||| | Sbjct 11368 GCTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATTT 11309 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGT 133621 | ||| | | ||||| |||||| ||||||| || | || ||| Sbjct 11308 TAGCCTTAACATTCTCAATGGTGTCGCTGGGCTCGACNTTGAGGGT 11263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483310833853520