Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maccullochella_20peelii_20[genbank_20GCA_5F002120245.1_202017-05-09] 18,198 sequences; 633,241,041 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq31 152 6e-32 >seq31 Length=442216 Score = 152 bits (168), Expect = 6e-32 Identities = 367/540 (68%), Gaps = 29/540 (5%) Strand=Plus/Plus Query 176945 GGCCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTA 177004 |||||| || | || || ||| |||||| |||||| ||||| ||||| ||| ||| | Sbjct 24224 GGCCAGCTCCTTGGGTGAGGTGAAGTCGTCCACGTGGATGAAGGCGTCCCCCTGGATAAA 24283 Query 177005 ATTTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGA 177064 || || || |||| || | || ||||| || | || || | || | ||||| Sbjct 24284 GTTCTCATAGTTCTGCCTGGCTGGGCCGAGAACCACTGGCACTGTCCCCAC----AGAGA 24339 Query 177065 TCGG----TAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGAT 177120 ||| || |||||||| ||||| |||||| |||| | |||||||||||| || || | Sbjct 24340 GCGGGTTGTACAGTTTTTCAGTAATGTAGTCCTTGTGGATGGAGTTCTCAAAAGCCAGGT 24399 Query 177121 AGAATTTACAG--GAAGATAGTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTAC 177178 |||| |||||| | ||| || |||| | |||| | || | || || || || | Sbjct 24400 AGAACTTACAGCTGGCGATGGT--GGGGAAGTAGTCTTGGTCAGAGATGTACTCCCCGAA 24457 Query 177179 TACGTTCCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGATCT 177238 | | || ||| |||| | || |||||||| ||||| ||||||| || | Sbjct 24458 GGCTTGTCCATATGCATGAACCTCAATGTGTTTGTACAGCTCATTGTAGTATTTCACCCG 24517 Query 177239 CACGTGGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGCGGGAAC 177298 ||||||||| | |||||| ||||| || | |||||| | | |||| | ||||| || Sbjct 24518 CACGTGGTCCTGGTTCCAGTTGCTCACAATCCAGCAGATCAGCTTG-TTTTTGCTGG-GT 24575 Query 177299 GGGATTCGA--TACTAAT-GCAGTGTCTCTG-AGCGTTAGTGATCCATAGGGCACGTGAA 177354 |||| ||| | || | || | | ||| || | || ||||| ||||| | || Sbjct 24576 GGGA--CGAAGTCCTCCTCGCCCT-CCGCTGCTACG--ATGGACCCATAAGGCACTTCAA 24630 Query 177355 TATCCGAGTCGCGTCTGTACGTTAACGTGAGATTGAAAAGGTTTTCTATACC---TTGTT 177411 | || | || | | ||| | | || |||||||| ||||| || || || | | Sbjct 24631 TGTCAGCATCCTGACGGTAATTGAGAGTCAGATTGAACAGGTTCTCGATCCCAGGCAGCT 24690 Query 177412 TGAAGGGGCTGTTACTGGGCGATTCTAAGTTCATCCATATCCACTTTTGAAAGGTTGGTC 177471 | ||| | ||| || |||||||| |||||||||||||||||||| || |||| ||||| Sbjct 24691 GGGAGGAG-TGTGAC--GGCGATTCCAAGTTCATCCATATCCACTTCTGGAAGGATGGTC 24747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578300421180800