Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maccullochella_20peelii_20[genbank_20GCA_5F002120245.1_202017-05-09] 18,198 sequences; 633,241,041 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq6074 111 1e-19 seq3162 84.2 1e-11 >seq6074 Length=24291 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| |||| ||| | || | ||| || ||| ||| || || |||||||| || ||| Sbjct 4794 CCACCCCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 4853 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| ||||| |||||||| |||| | |||||| ||| | || Sbjct 4854 AGGGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGA 4913 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701 | ||||| ||||| ||||| || | ||| ||| ||||||||| | ||||| Sbjct 4914 ATGCCTTCCTTGTCCTGGATTTTAGCCTTGA-CATTCTCAATGGTGTCGCTGGGCTCCAC 4972 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || | || || |||||||||||||| Sbjct 4973 CTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCAT 5020 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| |||| ||| | || | ||| || ||| ||| || || |||||||| || ||| Sbjct 3731 CCACCCCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 3790 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| || || || ||||| |||| | |||||| ||| | || Sbjct 3791 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGA 3850 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701 | ||||| ||||| ||||| || | ||| ||| ||||||||| | || || Sbjct 3851 ATGCCTTCCTTGTCCTGGATTTTAGCCTTGA-CATTCTCAATGGTGTCGCTGGGCTCGAC 3909 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || ||||| || | || || || ||||||||||| Sbjct 3910 CTCCAGGGTGATGGTCTTACCAGTGAGGGTCTTGACGAAGATCTGCAT 3957 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| |||| ||| | || | ||| || ||| ||| || || |||||||| || ||| Sbjct 4566 CCACCCCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 4625 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| || || || ||||| |||| | |||||| ||| | || Sbjct 4626 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGA 4685 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701 | ||||| ||||| ||||| || | ||| ||| |||||| || | || || Sbjct 4686 ATGCCTTCCTTGTCCTGGATTTTAGCCTTGA-CATTCTCAATGGTGTCACTGGGCTCGAC 4744 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || | || || |||||||||||||| Sbjct 4745 CTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCAT 4792 >seq3162 Length=48913 Score = 84.2 bits (92), Expect = 1e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 |||| || || ||| ||| || || |||||||| |||||||| ||||| | || ||| Sbjct 3024 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCC 2965 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | || || || ||||| |||| ||||||||| ||| | || | ||||| || || Sbjct 2964 AGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTATCCTGG 2905 Query 33661 ATTTTCTGTTTCAACATAGTCACG-GTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 || || |||| | | ||| ||||| |||| || || || | ||||| || || Sbjct 2904 ATCTTGGCCTTCA-CGTTCTCAATAGTGTCACTTGGCTCAACCTCCAGGGTGATGGTCTT 2846 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | || || || ||||||||||| Sbjct 2845 GCCAGTCAGGGTCTTCACGAAGATCTGCAT 2816 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328631097356160