Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maccullochella_20peelii_20[genbank_20GCA_5F002120245.1_202017-05-09] 18,198 sequences; 633,241,041 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq4239 161 9e-35 seq3162 100 3e-16 seq6074 84.2 2e-11 >seq4239 Length=33969 Score = 161 bits (178), Expect = 9e-35 Identities = 952/1499 (64%), Gaps = 56/1499 (4%) Strand=Plus/Plus Query 146938 TTGCTAGTGAAAGGCTCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTA 146997 ||||| ||| ||| |||| ||||||||| ||||| | || ||||| |||| || || Sbjct 29966 TTGCTGGTGTAAGCTTCAATAGACTCATTGTTGCCCAGGATCTGGGCGGTGGAGGCTGTG 30025 Query 146998 GGCATGTACGCCACCAACAATGAATTTCGCAGACCGTACGCACGG--ATGTTGTCCTTCA 147055 ||||| |||| || || || | || |||| || || || || ||||||| Sbjct 30026 GGCATCGGGGCCAGCAGCAGACTGTTCCTCACGCCGT--GCTTGGCAATCTTCTCCTTCA 30083 Query 147056 A-AGTTTGCCAGTCCCACA--TCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCA 147112 || || ||||||| || ||| | ||| ||| | |||||||||||||||||| | Sbjct 30084 GCAGCTT-CCAGTCCAGCAGGTCG--GTGGGTGTCTTCTCCCACATGTCGTACTGGAGGA 30140 Query 147113 CTCCTCGACTGGCGGGACTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGC-GCCAAT 147171 || ||| ||||| ||| || |||| ||| || || | || |||| Sbjct 30141 TGCCGTTGCTGACGGGAGAGCCTTCGTACGTCTCATAGGGGCCAA-GCTCAGCCGCCAGC 30199 Query 147172 TCACAGCTTGCCTCGAGCGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACG 147231 || ||||||||||| || || | ||||| ||||| || ||| || |||| || | Sbjct 30200 TCGCAGCTTGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATCTGAATGTTCAGCAGC 30259 Query 147232 GTCGCTTCTTCGCTCTCGTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGG 147291 || || ||| ||| | || ||||| || | ||||||||||||||||||||| Sbjct 30260 TGAGCCTCGGGGCTTTCGAACGGGTAACGCATGAGGATGAAGGCATCGGCCAAACCCTGG 30319 Query 147292 ATACCGACGCCGATAGGTC---GATGCTTTT----CGTTGCTGCGCTTCGCGCTCGCTAT 147344 | ||||| || || || | || |||| | | || || ||||| || | Sbjct 30320 ACACCGATTCCTATTGGCCTGTGACGCTTGTTGGACTTTTCT--GCTTCAGGC-----AC 30372 Query 147345 GGGATAGTGGTTGCGATCAATAATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGT 147404 |||||| ||| ||||| |||||||| | ||| |||| ||||| || | Sbjct 30373 TGGATAGAAGTTAATCTCAATTATCTTGTTTAAGTTTTTGACTATTACTTTGGTCACATA 30432 Query 147405 TTTGAGTTTCTCGAAATCATAAGTCCCGTC-TTCGACACGTACGCATTGGTTCACGGCGA 147463 ||||||| || ||| ||||| || | ||||| ||| ||| | || | Sbjct 30433 CGCTAGTTTCTTAAAGTCAAAAGTCTGCTCAGGGGTGACGTA--CAT--GTTGAGTGCAA 30488 Query 147464 TAGACGCCAGATTGCAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGC 147523 | || |||||||| ||||| ||| ||| ||| | | |||| | | |||||| | || Sbjct 30489 TGGAGGCCAGATTACAGACAGCCACCTCATCGTGGCTGGTGTATTCAATGATTTCTGTGC 30548 Query 147524 ACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGT 147583 | |||||||||| || ||| || | ||| ||||| ||||| |||| |||||||||| Sbjct 30549 AGAGGTTGCTGCTCTTGATGGTGCCTAGATTCTGCTGGTTGCTCTTCCTGTTGCACGCGT 30608 Query 147584 CTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGATAAACCTATG-- 147641 | ||| | |||||||| || ||||| || || | | |||||| || Sbjct 30609 CCTTGTACAGCATGTATGGCGTACCGGTTTCTGTCTGGGACT---CGATAATGGCGTGCC 30665 Query 147642 -CAGGTCCTGCGCTCGCACC---CGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGT 147697 ||| | ||| || |||| |||| || | ||||| || || || | Sbjct 30666 ACAGCTGCTGAGCCTTCACCAAGCGCT--TGA-CCCTCCCCTCCTTCTCATATGTGGTAT 30722 Query 147698 ACAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACACA 147757 | | | ||||||||| || || |||| ||| | || || || |||| | ||||||| Sbjct 30723 AGAGCTTCTCAAACTCCTCCCCCCAGCACTCGTCCAGCCCCGGGCACTCACTTGGACACA 30782 Query 147758 TCAGCGACCACATGTCGTCCGCGTT-AACGCGTCGCATAAACAGATCCGGCACCCACAGC 147816 |||| ||||| | | | || || || | ||| ||||| || || | ||||| Sbjct 30783 TCAGAGACCA-GTCTTGGTTGCTTTCCACTCTCTTCATGAACAGGTCGGGGATCCACATG 30841 Query 147817 GCGTACATAAGATCGC--GCGCTTTGCAATCCTCGGCGCCCATGTTGCGTTTCAAATTAA 147874 ||||| | |||||| | || || ||| ||||| || |||| |||| | | Sbjct 30842 GCGTAGAAAAGATCTCTGGCTCTCTGC--TCCTCCTTTCCTGTGTTCTTCTTCAGCTCCA 30899 Query 147875 GCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGC- 147933 | | | | | | || ||||||||| || | ||| | ||| | || || | | Sbjct 30900 GGAAGTCAAACACATCAAAGTGCCAGGGCTCCAGGTACATGGCAAAGGCTCCGGGCCTCT 30959 Query 147934 --TTTCCGCCCTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCA 147991 || || ||||||||||||| || | |||||||| | || | || |||||| | | Sbjct 30960 TGTTGCCACCCTGGTCGACATAACGTGCTGTGTTGTTATAAACTCTCAGCATGGGGACTA 31019 Query 147992 GGCCGCTCGCAGTGCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCA 148051 | || | | ||||||| ||| | ||| | ||| || | || | | | Sbjct 31020 GCCCATTGGAGTTGCCGTTTGTGCCAGCGATGTAGCTCCCCGTTGATCTGATGCAGCTGA 31079 Query 148052 CGTTAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCA-ATCGC-CCAATGTCGT 148109 | ||||| || || || | ||| || ||| || ||| || || || || Sbjct 31080 CCGCCACGCCGATTCCTCCAGCTGCCTTGGAGATG--AGGGCACATTGCTTCAGCGTGTC 31137 Query 148110 GTAGATGCCGTCGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGG 148169 || ||||| ||||||||||||| ||| | | | |||| || || ||| || || Sbjct 31138 ATAAATGCCTTCGATGCTGTCGTCTTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGG 31197 Query 148170 AATCCGCGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCAT 148229 | ||||| || ||| || || || ||||| || ||| | || | || Sbjct 31198 CCTGTTGGTTCCTGCGTTGAAGAGCGTAGGGGAGGCGTGGGTGAACCACTTCTCTGACAA 31257 Query 148230 CATGCGATACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCG 148289 || | || ||||| || || | ||||| || ||| || || | || || | Sbjct 31258 CAGGTTGTAGGTCTCGATGGCTGCGTCGATATCCGTTTTGTGGATCCCAACAGCCACTCT 31317 Query 148290 CATGAGCATGTGCTGTGGTCGTTCGGCAACTTGATTGTTGATCTTGAGAAGATATCCATT 148349 ||||||||||||||| || || ||||| |||| |||||||| | || || Sbjct 31318 CATGAGCATGTGCTGCGGCCGCTCGGCCACTTTGCCATTGATCTTCAACAGGTAGGACCG 31377 Query 148350 TTCGAGGGTTTTGTAACCAAAGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGGCCG 148408 || || || ||| | |||||| | ||||| | |||||| | ||| || |||||||| Sbjct 31378 CTCCAGCGTCTTGAAGCCAAAGAAGTTGTAGGCGAAATCTCGGTCGAAAATGATGGCCG 31436 >seq3162 Length=48913 Score = 100 bits (110), Expect = 3e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || ||||| || |||||||||||| | ||| || |||||| ||||| || || | | Sbjct 2781 GATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCA 2722 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||| || |||||||| |||||||| ||||| || || |||| Sbjct 2721 AAGATCAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTATCCTGGATCTTGGCCTTCACA 2662 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | ||| || | ||||| || || | || | || || |||||||| || || Sbjct 2661 TTCTCAATAGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTC 2602 Query 132110 ATGAAAATCTGCATGACT 132127 | |||||||||||| || Sbjct 2601 ACAAAAATCTGCATGCCT 2584 Score = 100 bits (110), Expect = 3e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || |||||||||||| | ||| || |||||| ||||| || || | | Sbjct 3009 GACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCA 2950 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||| || |||||||| |||||||| ||||| || || |||| Sbjct 2949 AAGATCAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTATCCTGGATCTTGGCCTTCACG 2890 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | ||| || | ||||| || || | || | || || |||||||| || || Sbjct 2889 TTCTCAATAGTGTCACTTGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTC 2830 Query 132110 ATGAAAATCTGCATGACT 132127 | ||| ||||||||| || Sbjct 2829 ACGAAGATCTGCATGCCT 2812 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || |||||||||||| | ||| || |||||| ||||| || || | | Sbjct 2553 GACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCA 2494 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||| || |||||||| ||||| || ||||| || || ||| | Sbjct 2493 AAGATCAGACGCTGCTGGTCTGGAGGGATGCCCTCCTTATCCTGGATCTTGGCTTTGACA 2434 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | || || | ||||| || || | || | || || |||||||| || || Sbjct 2433 TTTTCAATGGTGTCACTGGGCTCAACCTCCAAAGTGATGGTCTTGCCAGTCAGGGTCTTC 2374 Query 132110 ATGAAAATCTGCAT 132123 | ||||||||||| Sbjct 2373 ACAAAAATCTGCAT 2360 >seq6074 Length=24291 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| || | ||| | | | ||||| || || ||||||||||| | ||| || | Sbjct 4806 CGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCA 4865 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| |||||||| |||| | |||| || | ||| || ||||| || |||||||| || Sbjct 4866 TCTTCCAGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTG 4925 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||||| || | | || | || ||| | |||||||| || | || | Sbjct 4926 TCCTGGATTTTAGCCTTGACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATG 4985 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || || ||||| || || || | || ||||||||| Sbjct 4986 GTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCATG 5021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476502782867280