Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maccullochella_20peelii_20[genbank_20GCA_5F002120245.1_202017-05-09] 18,198 sequences; 633,241,041 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq172 113 1e-21 seq2978 100 9e-18 seq2053 100 9e-18 seq71 100 9e-18 seq918 98.7 3e-17 seq248 98.7 3e-17 seq104 98.7 3e-17 seq87 98.7 3e-17 seq39 98.7 3e-17 seq12968 95.1 4e-16 seq2297 93.3 1e-15 seq6899 86.0 2e-13 seq968 82.4 2e-12 seq38 78.8 3e-11 >seq172 Length=223174 Score = 113 bits (124), Expect = 1e-21 Identities = 68/72 (94%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1389 GCTGAAATAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 1330 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 1329 CCGGGTTTCGGC 1318 Score = 80.6 bits (88), Expect = 8e-12 Identities = 61/72 (85%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| ||||| |||||||||||| || |||| ||||||||||||| |||||||||| | Sbjct 524 GCCGAAATAGCTGAGTTGGGAGAGCGTTTGACTCAAGATCTAAAGGTTCCTGGTTCAATC 465 Query 2829 CCGGGCTTCAGC 2840 | ||| ||| || Sbjct 464 CTGGGTTTCTGC 453 >seq2978 Length=189572 Score = 100 bits (110), Expect = 9e-18 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | Sbjct 164808 GGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGAT 164867 Query 2828 CCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 164868 CCCGGGTTTCGGC 164880 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 162856 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 162915 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 162916 CCGGGTTTCGGC 162927 Score = 96.9 bits (106), Expect = 1e-16 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||| ||| |||||||||||||||||| ||||||||||||||| |||||||||||||| | Sbjct 107855 GGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTGAAGGTCCCTGGTTCGAT 107914 Query 2828 CCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 107915 CCCGGGTTTCGGC 107927 Score = 95.1 bits (104), Expect = 4e-16 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| ||||||||||||||| |||||||||||||| | | Sbjct 109147 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTGAAGGTCCCTGGTTCGATC 109206 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 109207 CCGGGTTTCGGC 109218 >seq2053 Length=143329 Score = 100 bits (110), Expect = 9e-18 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 2766 ATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCA 2825 || || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 99347 ATCGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCG 99288 Query 2826 ACCCCGGGCTTCAGC 2840 | |||||| ||| || Sbjct 99287 ATCCCGGGTTTCGGC 99273 >seq71 Length=283297 Score = 100 bits (110), Expect = 9e-18 Identities = 61/65 (94%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGGCT 2835 |||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||| | Sbjct 253191 TAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAATGTCCCTGGTTCAATCCCGGGTT 253250 Query 2836 TCAGC 2840 ||||| Sbjct 253251 TCAGC 253255 >seq918 Length=244628 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 151846 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 151787 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 151786 CCGGGTTTCGGC 151775 >seq248 Length=367401 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||| ||||||||||| |||||| ||| |||||||||||||||||||||||||||| | Sbjct 172942 GCTGAAATAGCTCAGTTGAGAGAGCGTTAAACTGAAGATCTAAAGGTCCCTGGTTCAATC 172883 Query 2829 CCGGGCTTCAGC 2840 | ||| |||||| Sbjct 172882 CTGGGTTTCAGC 172871 Score = 95.1 bits (104), Expect = 4e-16 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| ||||||||||||| |||||||||||||| | | | Sbjct 31118 GCAGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATTTAAAGGTCCCTGGTCCGATC 31177 Query 2829 CCGGGCTTCAGC 2840 ||||| |||||| Sbjct 31178 CCGGGTTTCAGC 31189 Score = 89.7 bits (98), Expect = 2e-14 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||| ||||||| |||||||||||||||||| ||||||| || ||||||||| ||| | Sbjct 31443 GCTGAAATAGCTCATTTGGGAGAGCATTAGACTCAAGATCTGAAAGTCCCTGGTCCAATC 31502 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 31503 CCGGGTTTCGGC 31514 Score = 86.0 bits (94), Expect = 2e-13 Identities = 63/72 (88%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||||||||||||||||||| |||||||||||| | | Sbjct 31754 GCAGAAATAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTGAAGGTCCCTGGTCTGATC 31813 Query 2829 CCGGGCTTCAGC 2840 || || |||||| Sbjct 31814 CC-GGTTTCAGC 31824 >seq104 Length=259181 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 187971 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 188030 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 188031 CCGGGTTTCGGC 188042 >seq87 Length=295905 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 26588 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 26647 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 26648 CCGGGTTTCGGC 26659 >seq39 Length=319596 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 312942 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 312883 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 312882 CCGGGTTTCGGC 312871 >seq12968 Length=10150 Score = 95.1 bits (104), Expect = 4e-16 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| ||||||||||||||||||||||||||| || | | Sbjct 1051 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGATCGATC 992 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 991 CCGGGTTTCGGC 980 Score = 95.1 bits (104), Expect = 4e-16 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| ||||||||||||||||||||||||||| || | | Sbjct 2754 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGATCGATC 2695 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 2694 CCGGGTTTCGGC 2683 Score = 95.1 bits (104), Expect = 4e-16 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| ||||||||||||||||||||||||||| || | | Sbjct 3048 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGATCGATC 2989 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 2988 CCGGGTTTCGGC 2977 Score = 95.1 bits (104), Expect = 4e-16 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||| |||||| |||| | Sbjct 3342 GCAGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGACCCTGGATCAATC 3283 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 3282 CCGGGTTTCGGC 3271 Score = 95.1 bits (104), Expect = 4e-16 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| ||||||||||||||||||||||||||| || | | Sbjct 7583 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGATCGATC 7524 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 7523 CCGGGTTTCGGC 7512 Score = 95.1 bits (104), Expect = 4e-16 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| ||||||||||||||||||||||||||| || | | Sbjct 7877 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGATCGATC 7818 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 7817 CCGGGTTTCGGC 7806 Score = 95.1 bits (104), Expect = 4e-16 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| ||||||||||||||||||||||||||| || | | Sbjct 8171 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGATCGATC 8112 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 8111 CCGGGTTTCGGC 8100 Score = 95.1 bits (104), Expect = 4e-16 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| ||||||||||||||||||||||||||| || | | Sbjct 8908 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGATCGATC 8849 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 8848 CCGGGTTTCGGC 8837 Score = 95.1 bits (104), Expect = 4e-16 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||| |||||| |||| | Sbjct 9202 GCAGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGACCCTGGATCAATC 9143 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 9142 CCGGGTTTCGGC 9131 Score = 95.1 bits (104), Expect = 4e-16 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| ||||||||||||||||||||||||||| || | | Sbjct 9781 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGATCGATC 9722 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 9721 CCGGGTTTCGGC 9710 Score = 95.1 bits (104), Expect = 4e-16 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| ||||||||||||||||||||||||||| || | | Sbjct 10075 GCAGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGATCGATC 10016 Query 2829 CCGGGCTTCAGC 2840 | ||| |||||| Sbjct 10015 CTGGGTTTCAGC 10004 >seq2297 Length=106479 Score = 93.3 bits (102), Expect = 1e-15 Identities = 54/56 (96%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTC 2824 |||||| |||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 90106 GCTGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTC 90161 >seq6899 Length=14752 Score = 86.0 bits (94), Expect = 2e-13 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||| |||||||| ||||||||| ||||||||||||||||||||||||| ||| | | Sbjct 8324 GCTGAAATAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTCGTTTGATC 8265 Query 2829 CCGGGCTTCAGC 2840 | ||| ||| || Sbjct 8264 CTGGGTTTCGGC 8253 >seq968 Length=114012 Score = 82.4 bits (90), Expect = 2e-12 Identities = 51/55 (93%), Gaps = 0/55 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTT 2823 || ||| |||||||||||||||||||||||||||||||||| |||||||| |||| Sbjct 78185 GCCGAAATAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTGAAGGTCCCGGGTT 78131 >seq38 Length=317698 Score = 78.8 bits (86), Expect = 3e-11 Identities = 66/80 (83%), Gaps = 1/80 (1%) Strand=Plus/Minus Query 2762 GTTTATG-GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTG 2820 |||| || || ||| ||| |||||||| ||||||||||||||||| || |||| ||||| Sbjct 167965 GTTTCTGAGCCGAAATAGTTCAGTTGGCAGAGCATTAGACTGAAGCTCCAAAGATCCCTA 167906 Query 2821 GTTCAACCCCGGGCTTCAGC 2840 |||||| || ||| ||| || Sbjct 167905 GTTCAATCCTGGGTTTCGGC 167886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15846445285710