Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maccullochella_20peelii_20[genbank_20GCA_5F002120245.1_202017-05-09] 18,198 sequences; 633,241,041 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq112 154 2e-32 >seq112 Length=268450 Score = 154 bits (170), Expect = 2e-32 Identities = 142/180 (79%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 146983 TTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAG 147042 || || || || | ||| || | ||||||||| || || | ||||||||||| ||||| Sbjct 20153 TTGAGTCCTGTGATGTGTGCGATCATGTAGGTAAGAAGTGCATAGCTGGCTATATTGAAA 20212 Query 147043 GGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCG 147102 || |||||||||||||| || ||||| | |||||||||||| ||||| ||||| || || Sbjct 20213 GGCACCCCCAGGCCCATATCACCCGAACGCTGGTACAGCTGACACGACAGCTCACCATCA 20272 Query 147103 GCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGCG 147162 |||||| ||||| |||||| |||||| || ||||| |||||| |||||||| ||| Sbjct 20273 CACACGTAGAACTGACACAGGGCGTGGCAGGGGGGCAGAGCCATGAGAGGCAGGTCTGCG 20332 Score = 82.4 bits (90), Expect = 9e-11 Identities = 107/147 (73%), Gaps = 6/147 (4%) Strand=Plus/Plus Query 147276 GTACCTGGCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTT 147335 |||| ||| |||||||||||||||||||| || ||||| || ||||||||||| || Sbjct 21406 GTACTCGGCACCAAAGTGCCTCCACTGGAAACCATACACAGGTCCCAGGTCGCCTTCCTC 21465 Query 147336 TCTGTGCGAGAAGCCCGCCCGCTTG---AGAAACTCGGGGGACCCGTGGGCGTCCCAGAT 147392 ||| | | ||||| | | ||| || || || ||||||| | ||| ||||| || Sbjct 21466 TCTATCAGTGAAGC---CAAGGTTGTCCAGGAAGTCCCGGGACCCATTGGCATCCCAAAT 21522 Query 147393 GCCCACTCCCTTGGCGGAGAGCTCCTT 147419 || || || || ||||||||||| Sbjct 21523 CTTTACCCCTTTCGCCGAGAGCTCCTT 21549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583355271067200