Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maccullochella_20peelii_20[genbank_20GCA_5F002120245.1_202017-05-09] 18,198 sequences; 633,241,041 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq11711 165 1e-34 seq8190 161 1e-33 seq5808 161 1e-33 seq5099 158 2e-32 seq2779 158 2e-32 seq290 156 6e-32 seq1161 93.3 6e-13 seq2418 91.5 2e-12 seq7404 89.7 7e-12 seq4239 86.0 9e-11 >seq11711 Length=2130 Score = 165 bits (182), Expect = 1e-34 Identities = 176/231 (76%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971 ||||||||||| | || ||||| |||||| |||| |||| ||| ||| ||| Sbjct 37 TCTACAAGGTGATGAAACAGGTCCACCCCGACACCGG-----CATC-TCCTCTAAGGCCA 90 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 || ||||||||||| || ||||||||||| |||| ||||||| | |||||| | Sbjct 91 TGGGCATCATGAACTCCTTCGTCAACGACATTTTCGAGCGCATCGCCGGTGAGGCCTCCC 150 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 ||||||| | || |||||||||| ||| ||| | | | ||||||||||||||||| | Sbjct 151 GCCTGGCTCACTACAACAAGCGCTCCACCATCACCTCCAGGGAGATCCAGACCGCCGTCC 210 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| | ||| ||| || ||||||| ||||||||| || |||||||||| Sbjct 211 GCCTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCTGAGGGCACCA 261 >seq8190 Length=11411 Score = 161 bits (178), Expect = 1e-33 Identities = 174/229 (76%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 || |||||||| |||||||| |||||| |||| || |||||||| | ||||| Sbjct 1017 TATAAGGTGCTGAAGCAGGTCCACCCCGACACCG---GGATCTCCTCCAA---GGCCATG 964 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||| ||||| | |||||| |||| ||||||| | ||| || || Sbjct 963 CTGATCATGAACTCCTTTGTGAGCGACATCTTCGAGCGCATCGCCGGTGAGTCCTCCCGT 904 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||| | || |||||||||| ||| ||| | | | ||||||||||||||||| ||| Sbjct 903 CTGGCTCACTACAACAAGCGCTCCACCATCACCTCCAGGGAGATCCAGACCGCCGTCCGC 844 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||| || ||||||| ||||||||| || |||||||||| Sbjct 843 CTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCTGAGGGCACCA 795 >seq5808 Length=40005 Score = 161 bits (178), Expect = 1e-33 Identities = 174/229 (76%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| || ||||| |||||| |||| || |||||||| | ||||| Sbjct 34614 TACAAGGTGCTGAAACAGGTCCACCCCGACACCG---GGATCTCCTCCAA---GGCCATG 34561 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||| ||||| | |||||| |||| ||||||| | ||| || || Sbjct 34560 CTGATCATGAACTCCTTTGTGAGCGACATCTTCGAGCGCATCGCCGGTGAGTCCTCCCGT 34501 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||| | || |||||||||| ||| ||| | | | ||||||||||||||||| ||| Sbjct 34500 CTGGCTCACTACAACAAGCGCTCCACCATCACCTCCAGGGAGATCCAGACCGCCGTCCGC 34441 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||| || ||||||| ||||||||| || |||||||||| Sbjct 34440 CTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCTGAGGGCACCA 34392 >seq5099 Length=50958 Score = 158 bits (174), Expect = 2e-32 Identities = 173/229 (76%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| || ||||| |||||| |||| || |||||||| | ||||| Sbjct 49323 TACAAGGTGCTGAAACAGGTCCACCCCGACACCG---GGATCTCCTCCAA---GGCCATG 49376 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| ||||| | |||||| |||| ||||||| | ||| || || Sbjct 49377 GGCATCATGAACTCCTTTGTGAGCGACATCTTCGAGCGCATCGCCGGTGAGTCCTCCCGT 49436 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||| | || |||||||||| ||| ||| | | | ||||||||||||||||| ||| Sbjct 49437 CTGGCTCACTACAACAAGCGCTCCACCATCACCTCCAGGGAGATCCAGACCGCCGTCCGC 49496 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||| || ||||||| ||||||||| || |||||||||| Sbjct 49497 CTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCTGAGGGCACCA 49545 >seq2779 Length=54908 Score = 158 bits (174), Expect = 2e-32 Identities = 173/229 (76%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 || |||||||| |||||||| |||||| |||| |||| ||| |||| ||||| Sbjct 54043 TATAAGGTGCTGAAGCAGGTCCACCCCGACACCGG-----CATC-TCCTCCAAGGCCATG 53990 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| ||||| | |||||| |||| ||||||| | ||| || ||| Sbjct 53989 GGCATCATGAACTCCTTTGTGAGCGACATCTTCGAGCGCATCGCCGGTGAGTCCTCCCGC 53930 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||| | || ||||||||| ||| ||| | | | ||||||||||||||||| ||| Sbjct 53929 CTGGCTCACTACAACAAGCGTTCCACCATCACCTCCAGGGAGATCCAGACCGCCGTCCGC 53870 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||| || ||||||| ||||||||| || |||||||||| Sbjct 53869 CTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCTGAGGGCACCA 53821 >seq290 Length=227343 Score = 156 bits (172), Expect = 6e-32 Identities = 175/231 (76%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971 ||||||||||||| |||||||||||||| || || ||| || ||||| | ||| Sbjct 28625 TCTACAAGGTGCTGAAGCAGGTGCACCCA-GACACG--GGGATCTCATCCAA---GGCCA 28572 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 || ||||||||||||||||||||||| || |||| ||||||| || || | Sbjct 28571 TGGGCATCATGAACTCGTTTGTCAACGATATCTTCGAGCGCATCGCTGGGGAAGCGTCGC 28512 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 ||||||||| || ||||||| | ||| ||| | | | ||||||||||| ||||| | Sbjct 28511 GCCTGGCGCACTACAACAAGAGATCCACCATCACCTCCAGGGAGATCCAGACTGCCGTCC 28452 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| | ||| |||||| ||||||| ||| ||||| ||||| ||||||| Sbjct 28451 GCCTGCTGCTGCCCGGCGAGCTGGCCAAGCATGCCGTGTCCGAAGGCACCA 28401 >seq1161 Length=118247 Score = 93.3 bits (102), Expect = 6e-13 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 262124 GAGACCGGCACGCCCTACATGGTCTACAAGGACGCCGTCAACCTGACCAGCAACCAGCAG 262183 || ||||| ||||| |||||| |||||||||||||| |||| || |||||||||||| Sbjct 53832 GAAACCGGTACGCCATACATGCTCTACAAGGACGCCTGCAACAGGAAGAGCAACCAGCAG 53891 Query 262184 AACCTGGGCACCACGACAGAGGCCAACCTGTGCACCGAGATCGT 262227 || |||||||||| | | ||| |||||||| |||||||| Sbjct 53892 AATCTGGGCACCATCAAATCCAGCAATCTGTGCACGGAGATCGT 53935 Score = 87.8 bits (96), Expect = 3e-11 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 262934 TGCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGATCCTGGGCAACACCGAGGCGT 262993 ||||| |||| | ||||||||| || | || | |||||||||||||||| ||| | Sbjct 54822 TGCTCTTGGCCCCCATGCCCACAGCTTCCACTGCCCAGATCCTGGGCAACAATGAGTCCA 54881 Query 262994 TCGAGGTCATCACGAGCAACATCTACACGCGCCGCGTGCTCTCGGGCGACTTT 263046 | |||| | ||| |||||||||||||| ||| | |||||||| || || ||| Sbjct 54882 TTGAGGCCTACACCAGCAACATCTACACCCGCAGGGTGCTCTCAGGAGAGTTT 54934 >seq2418 Length=62437 Score = 91.5 bits (100), Expect = 2e-12 Identities = 89/112 (79%), Gaps = 2/112 (2%) Strand=Plus/Plus Query 1813106 CGGTTAAAGCCGTGCCGCGTGACGGCCACCAC-TGAGCCGCGGCAACACATGGTGTCGGT 1813164 ||||| | |||||| ||||||| ||||| || ||| |||||||| ||||||||| Sbjct 1398 CGGTTGATGCCGTGACGCGTGATGGCCATCAGGTGA-CCGCGGCACGTCATGGTGTCACA 1456 Query 1813165 GGCCAGCGCAAAGTGGCGGTCGTTGACATAGGTGCCGTCAAAGGAGATCACG 1813216 | ||| || ||||| |||| ||||||||||| |||||||||||||| ||| Sbjct 1457 GAGCAGAGCCAAGTGACGGTAGTTGACATAGGAACCGTCAAAGGAGATGACG 1508 >seq7404 Length=21843 Score = 89.7 bits (98), Expect = 7e-12 Identities = 89/114 (78%), Gaps = 1/114 (1%) Strand=Plus/Plus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775 |||||||||||| || ||||| ||||| ||| | |||||||||| ||||| Sbjct 14741 GAGCCGCTGCTGAAGGAGAACCCCCGTCGCTTCGTCATCTTCCCCATCCAGTACCACGAC 14800 Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGT 1455829 || ||| | |||||| || |||||||||||||| || |||||||| |||||||| Sbjct 14801 ATCTGGCAGATGTAC-AAGAAGGCCGAGGCCTCTTTCTGGACCGCAGAGGAGGT 14853 >seq4239 Length=33969 Score = 86.0 bits (94), Expect = 9e-11 Identities = 95/124 (77%), Gaps = 2/124 (2%) Strand=Plus/Minus Query 262103 GCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTACAAGGACGCCGTC 262162 |||||| ||| | |||| | || ||||| ||||| |||||| | ||||||||||| | Sbjct 30660 GCCATTATCGAGTCCCAGACAGAAACCGGTACGCCATACATGCTGTACAAGGACGCGTGC 30601 Query 262163 AACCTGACCAGCAACCAGCAGAACCTGGGCACCACGACAGAG-GCCAACCTGTGCACCGA 262221 ||| || |||||||||||||| || ||||||| | |||| |||||| ||||| || Sbjct 30600 AACAGGAAGAGCAACCAGCAGAATCTAGGCACCATCA-AGAGCAGCAACCTCTGCACAGA 30542 Query 262222 GATC 262225 ||| Sbjct 30541 AATC 30538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7176055969452076