Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maccullochella_20peelii_20[genbank_20GCA_5F002120245.1_202017-05-09] 18,198 sequences; 633,241,041 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq3162 114 1e-20 seq6074 100 3e-16 seq4239 93.3 4e-14 seq1161 89.7 5e-13 seq356 82.4 8e-11 >seq3162 Length=48913 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 |||||||| || || | ||| || || || ||||| ||||| || |||||||||||| Sbjct 2586 CCTCCTCTCAGACGGAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 2527 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||| ||||| ||||| |||| ||||||||| || || || Sbjct 2526 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCTGGAGGG 2467 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || || |||||| || | ||||| | || || Sbjct 2466 ATGCCCTCCTTATCCTGGATCTTGGCTTTGACATTTTCAATGGTGTCACTGGGCTCAACC 2407 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 || | ||| ||||| || || || | || || || ||||| ||||||||| Sbjct 2406 TCCAAAGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAAATCTGCATTTTG 2356 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 134484 TTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCG 134543 |||||||| | ||| || | || ||||| || ||||| ||||| || |||||||||||| Sbjct 3045 TTTCCTCCACGGAGACGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG 2986 Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 | |||| | || || ||||| ||||| ||||| |||| ||||||||| || || Sbjct 2985 GAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCTGGA 2926 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCC 134663 || |||||||| || || || || || || || || | ||||| | || Sbjct 2925 GGGATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCAATAGTGTCACTTGGCTCA 2866 Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || ||||| || || || | || || ||||| || ||||| Sbjct 2865 ACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 2816 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| || || || | || ||||| || |||||||| || || |||||||||||| Sbjct 2814 CCTCCCCTCAGACGGAGGACCAGGTGGAGTGTGGATTCTTTCTGGATGTTGTAGTCGGAG 2755 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||| ||||| ||||| |||| ||||||||| || || || Sbjct 2754 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCTGGAGGG 2695 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || || || || || || || | ||||| | || || Sbjct 2694 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCAATAGTGTCACTGGGCTCAACC 2635 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || || || | || || || ||||| ||||| Sbjct 2634 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAAATCTGCAT 2588 >seq6074 Length=24291 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || || || |||| || || || || ||||| ||||| || ||||||||||| Sbjct 4794 CCACCCCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 4853 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||||||||| ||||| |||| | |||||| || || || Sbjct 4854 AGGGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGA 4913 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || || ||||| ||||| || | |||||| | ||||| Sbjct 4914 ATGCCTTCCTTGTCCTGGATTTTAGCCTTGACATTCTCAATGGTGTCGCTGGGCTCCACC 4973 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 || || || ||||| || || || | || || || || || ||||| || Sbjct 4974 TCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCATGTT 5023 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || || || |||| || || || || ||||| ||||| || ||||||||||| Sbjct 3731 CCACCCCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 3790 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||| ||||| ||||| |||| | |||||| || || || Sbjct 3791 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGA 3850 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || || ||||| ||||| || | |||||| | || || Sbjct 3851 ATGCCTTCCTTGTCCTGGATTTTAGCCTTGACATTCTCAATGGTGTCGCTGGGCTCGACC 3910 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| ||||| || | || || ||||| || ||||| Sbjct 3911 TCCAGGGTGATGGTCTTACCAGTGAGGGTCTTGACGAAGATCTGCAT 3957 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || || || |||| || || || || ||||| ||||| || ||||||||||| Sbjct 4566 CCACCCCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 4625 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||| ||||| ||||| |||| | |||||| || || || Sbjct 4626 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGA 4685 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || || ||||| ||||| || | ||||| | || || Sbjct 4686 ATGCCTTCCTTGTCCTGGATTTTAGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACC 4745 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || || || | || || || || || ||||| Sbjct 4746 TCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCAT 4792 >seq4239 Length=33969 Score = 93.3 bits (102), Expect = 4e-14 Identities = 123/171 (72%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 8232 CGCCATTATCGAATGTCAAAACGAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTG 8291 |||||||||||| | || | |||||||||| ||| |||||||||||||| ||||| || Sbjct 30661 CGCCATTATCGAGTCCCAGACAGAAACCGGTACGCCATACATGCTGTACAAGGACGCGTG 30602 Query 8292 CAACGCCAAAAGCAATCAAAGCAACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTGA 8351 |||| || ||||| || || | |||||||| ||||||| || ||| | || Sbjct 30601 CAACAGGAAGAGCAACCAGCAGAATCTAGGCACCATCAAGAGCAGCAACCTCTGCACAGA 30542 Query 8352 AATTGTACAGTACAGCGCGCCCGACGAAGTGGCCGTTTGCAATCTAGCGTC 8402 ||| | | |||| | | ||| || ||||| || || ||||| || || Sbjct 30541 AATCATTGAATACACCAGCCACGATGAGGTGGCTGTCTGTAATCTGGCCTC 30491 Score = 89.7 bits (98), Expect = 5e-13 Identities = 295/457 (65%), Gaps = 9/457 (2%) Strand=Plus/Minus Query 7524 CTACTTGTTGAAAATCAACGGCGAATGCGCGGAACGAATTCAACACATGCTGTTGCGCGT 7583 |||| ||||||| ||||| ||| || || || || || |||||||| || | || Sbjct 31372 CTACCTGTTGAAGATCAATGGCAAAGTGGCCGAGCGGCCGCAGCACATGCTCATGAGAGT 31313 Query 7584 GGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTGGAAACGTACCAAATGATGTC 7643 ||| || || || ||| || || ||||| ||| | || || ||| | || |||| Sbjct 31312 GGCTGTTGGGATCCACAAAACGGATATCGACGCAGCCATCGAGACCTACAACCTGTTGTC 31253 Query 7644 TTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCCGCGGGCACAAACGCGCCTCA 7703 ||| ||| || ||||| || || || | || ||| || || ||| ||| || Sbjct 31252 AGAGAAGTGGTTCACCCACGCCTCCCCTACGCTCTTCAACGCAGGAACCAACAGGCCACA 31193 Query 7704 ATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAGCATCGACGGCATTTACAACAC 7763 ||||| || || |||| ||||| || ||||||||||| |||||||| |||| Sbjct 31192 GCTGTCCAGCTGCTTCCTGCTCGCCATGAAAGACGACAGCATCGAAGGCATTTATGACAC 31133 Query 7764 GCTGCGCGATTGCGCCAATATTTCCAAATACGGCGGCGGAATAGGTCTGAACGTAAACGA 7823 |||| | || ||| || ||||| | || ||||| || || || | | Sbjct 31132 GCTGAAGCAATGTGCCCTCATCTCCAAGGCAGCTGGAGGAATCGGCGTGGCGGTCAGCTG 31073 Query 7824 CGTGCGCGCCAACGGTAGCCGCATCGTGTCCACCAACGGAAAAGCCAGCGGTTTAGAGCC 7883 | | | | | || ||| ||||| ||| ||||| || ||| || ||| || Sbjct 31072 CATCAGATCAACGGGGAGCTACATCGCTGGCACAAACGGCAACTCCAATGGGCTAGTCCC 31013 Query 7884 CATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTAGACCAGGGGGGAAAGCGCAA-AG 7942 |||| || | || | || ||| | | || |||| |||||||| || || ||| || Sbjct 31012 CATGCTGAGAGTTTATAACAACACAGCACGTTATGTCGACCAGGGTGGCAA---CAAGAG 30956 Query 7943 GC-----GCCGCTGCCATCTATTTGGAGCCGTGGCAC 7974 || ||| |||||| || ||||||| |||||| Sbjct 30955 GCCCGGAGCCTTTGCCATGTACCTGGAGCCCTGGCAC 30919 >seq1161 Length=118247 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 8232 CGCCATTATCGAATGTCAAAACGAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTG 8291 ||| || || || | ||| | |||||||||| ||| |||||||| ||||| ||||| || Sbjct 53810 CGCTATAATTGAGTCTCAGACAGAAACCGGTACGCCATACATGCTCTACAAGGACGCCTG 53869 Query 8292 CAACGCCAAAAGCAATCAAAGCAACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTGA 8351 |||| || ||||| || || |||||||||| | ||||||||||||| | || Sbjct 53870 CAACAGGAAGAGCAACCAGCAGAATCTGGGCACCATCAAATCCAGCAATCTGTGCACGGA 53929 Query 8352 AATTGTACAGTACA 8365 || ||| |||||| Sbjct 53930 GATCGTAGAGTACA 53943 >seq356 Length=191405 Score = 82.4 bits (90), Expect = 8e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || || || |||| || || || || ||||| ||||| || ||||||||||| Sbjct 11450 CCGCCCCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 11391 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||| ||||| ||||| |||| | |||||| || || || Sbjct 11390 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGA 11331 Query 134607 ATGCCTTCTTTTTCTTGAATTTT 134629 |||||||| || || || ||||| Sbjct 11330 ATGCCTTCCTTGTCCTGGATTTT 11308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505283434498960