Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maccullochella_20peelii_20[genbank_20GCA_5F002120245.1_202017-05-09] 18,198 sequences; 633,241,041 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq4239 515 5e-141 seq49 120 4e-22 seq1161 102 1e-16 >seq4239 Length=33969 Score = 515 bits (570), Expect = 5e-141 Identities = 1288/1944 (66%), Gaps = 23/1944 (1%) Strand=Plus/Plus Query 68653 TTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTA 68712 ||||| ||||| || |||||| |||||||| | || | || ||||| ||||| Sbjct 29864 TTCTTCATCTCCTCGCTCCACAGCCCCCTCTCCGTCAGGTCTTTGAGCAGATGTGGATTC 29923 Query 68713 ACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCC 68772 || || ||||| || ||||| | || || || ||||| || || ||||| || | ||| Sbjct 29924 ACGATCTGAAACTCTCCAGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAAGCTTCA 29983 Query 68773 ACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAAT 68832 | ||| ||||| || ||||| || || || || || || || ||||| || |||| || Sbjct 29984 ATAGACTCATTGTTGCCCAGGATCTGGGCGGTGGAGGCTGTGGGCATCGGGGCCAGCAGC 30043 Query 68833 AAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGA 68892 | ||| || || | || || | || || || || || | ||||| ||| || Sbjct 30044 AGACTGTTCCTCACGCCGTGCTTGGCAATCTTCTCCTTCAGCAGCTTCCAGTCCAGCAGG 30103 Query 68893 TCAGATGGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCA 68952 || | ||| | ||| | ||||| || || || ||||| || | || || Sbjct 30104 TCGGTGGGTGTCTTCTCCCACATGTCGTACTGGAGGATGCCGTTGCTGACGGGAGAGCCT 30163 Query 68953 TTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCG 69012 | || || ||||| || || || | || || || || |||||||| | || || Sbjct 30164 TCGTACGTCTCATAGGGGCCAAGCTCAGCCGCCAGCTCGCAGCTTGCCTCCAGGGCGGCG 30223 Query 69013 TAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGA 69072 || || || || || || |||| | || || || || || | || ||||| || Sbjct 30224 TAGTAGATGGTCTCAAAGATCTGAATGTTCAGCAGCTGAGCCTCGGGGCTTTCGAACGGG 30283 Query 69073 TAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGT 69132 ||| | | || || || ||||| ||||| ||||| || || || || || || || || Sbjct 30284 TAACGCATGAGGATGAAGGCATCGGCCAAACCCTGGACACCGATTCCTATTGGCCTGTGA 30343 Query 69133 CTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTA 69192 | ||| || || |||| ||||| || | ||||| | ||||| || || || || || Sbjct 30344 CGCTTGTTGGACTTTTCTGCTTCAGGCACTGGATAGAAGTTAATCTCAATTATCTTGTTT 30403 Query 69193 AGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAA--TCGTC-CA 69249 | ||| ||||| |||||| ||| | | |||||| ||| ||||| || | || Sbjct 30404 AAGTTTTTGACTATTACTTTGGTCACATACGCTAGTTTCTTAAAGTCAAAAGTCTGCTCA 30463 Query 69250 TCTATAACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAA 69309 | || |||| || ||||| | || || |||||||| || || ||||||| Sbjct 30464 GGGGTGACGTACATGTTGAGTGCAATGGAGGCCAGATTACAGACAGCCACCTCATCGTGG 30523 Query 69310 TTTGCATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGC 69369 | | |||| || || ||||| || || || || | ||||| || || ||||| ||| Sbjct 30524 CTGGTGTATTCAATGATTTCTGTGCAGAGGTTGCTGCTCTTGATGGTGCCTAGATTCTGC 30583 Query 69370 TGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATC 69429 || || ||||| |||| || ||||||||||| || || | || ||||| ||||| || Sbjct 30584 TGGTTGCTCTTCCTGTTGCACGCGTCCTTGTACAGCATGTATGGCGTACCGGTTTCTGTC 30643 Query 69430 TGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAACGCTTC 69489 || || |||||||| | | ||| | | ||| || | | | |||| | | | Sbjct 30644 TGGGACTCGATAATGGCGTGCCACAGCTGCTGAGCCTTCACCAAGCGCTTGACCCTCCCC 30703 Query 69490 TCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCA 69549 || || |||||| ||||| ||| || || || || ||||| || |||| || Sbjct 30704 TCCTTCTCATATGTGGTATAGAGCTTCTCAAACTCCTCCCCCCAGCACTCGTCCAGCCCC 30763 Query 69550 GGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTA--ACTCGTTTCATAA 69607 || || ||| |||||||||||| ||||| | | | | ||| |||| ||||| | Sbjct 30764 GGGCACTCACTTGGACACATCAGAGACCAGTCTTGGT--TGCTTTCCACTCTCTTCATGA 30821 Query 69608 ATAGATCGGGAATCCAAAGAGC-TATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCT 69666 | || ||||| ||||| | || || ||| |||||||||| ||| | || || |||||| Sbjct 30822 ACAGGTCGGGGATCCACATGGCGTAGAAA-AGATCTCTGGCTCTCTGCTCCTCCTTTCCT 30880 Query 69667 GTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATC 69726 || || || || || || || || || | | |||| | ||||| || || || || || Sbjct 30881 GTGTTCTTCTTCAGCTCCAGGAAGTCAAACACATCAAAGTGCCAGGGCTCCAGGTACATG 30940 Query 69727 GCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAG 69786 || | | |||| || | || || || ||||| || | || | || ||||| ||||| Sbjct 30941 GCAAAGGCTCCGGGCCTCTTGTTGCCACCCTGGTCGACATAACGTGCTGTGTTGTTATAA 31000 Query 69787 ACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCT 69846 ||||||||||| || | | ||||| || || || ||||| |||| || || || || Sbjct 31001 ACTCTCAGCATGGGGACTAGCCCATTGGAGTTGCCGTTTGTGCCAGCGATGTAGCTCCCC 31060 Query 69847 CTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCA 69906 ||| | || || | | | || |||||||| || || ||||| || ||| Sbjct 31061 GTTGATCTGATGCAGCTGACCGCCACGCCGATTCCTCCAGCTGCCTTGGAGATGAGGGCA 31120 Query 69907 CAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAA 69966 || | |||| |||||||| || || || ||||| || ||| ||||| || || || Sbjct 31121 CATTGCTTCAGCGTGTCATAAATGCCTTCGATGCTGTCGTCTTTCATGGCGAGCAGGAAG 31180 Query 69967 CAGCTAGACATTTGATGA-TGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGT 70025 ||||| |||| || | ||| | ||||| || || || | ||||| || ||||| || Sbjct 31181 CAGCTGGACAGCTGTGGCCTGT-TGGTTCCTGCGTTGAAGAGCGTAGGGGAGGCGTGGGT 31239 Query 70026 GAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCCCACTGATG 70085 |||||| || || || | ||| ||||| || || || |||| || |||||| | || Sbjct 31240 GAACCACTTCTCTGACAACAGGTTGTAGGTCTCGATGGCTGCGTCGATATCCGTTTTGTG 31299 Query 70086 AATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTAT 70145 || || | || || | ||| | ||| ||||| || || || || ||| ||| || Sbjct 31300 GATCCCAACAGCCACTCTCATGAGCATGTGCTGCGGCCGCTCGGCCACTTTGCCATTGAT 31359 Query 70146 TTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCT 70205 ||||||||||| || ||||| || || || ||||| ||||||| | || |||| Sbjct 31360 CTTCAACAGGTAGGACCGCTCCAGCGTCTTGAAGCCAAAGAAGTTGTAGGCGAAATCTCG 31419 Query 70206 TTCGTAAATAATAACAGAATTTAGTTTATCCTTATATTTGGTAACTATATC---CATAAC 70262 ||| |||| || | || || || || |||| | ||| || || | | | Sbjct 31420 GTCGAAAATGATGGCCGAGTTGAGGCGGTCTTTATTCTCAAGAACAATGTCGAGCGTCTC 31479 Query 70263 AGTAGGTGAGATAATCGGAGA---TCGTTTACCATTTTTAGGATTAACATAGTTGAATAA 70319 | ||||| || ||||| ||||| |||| || || || |||||||| | Sbjct 31480 CTT---GGAGATCATGGGAGAGTGGCGTTT---ATTTAAGGGGTTGACGTAGTTGAACAG 31533 Query 70320 ATCTTCCATTACATCACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTAT 70379 || ||||| |||||||| || | || || || || ||||| | ||||| | ||| || Sbjct 31534 GTCCTCCATCACATCACTGAACACCTTCTTCGTCTCTTTGTGCAGGTTTGAGACGGCGAT 31593 Query 70380 TCTGGCTGCTAGAATAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGC 70439 | || || || || |||||||| || |||| || || ||| || || || || || Sbjct 31594 GCGCGCGGCGAGGATGGCATAGTCGGGGTGTTTAGTGGTGAGAGTGGCGGCGATCTCTGC 31653 Query 70440 AGCTAACGTATCTAATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCAT 70499 || | || || | || | || || ||||| | || || || || || || ||||| Sbjct 31654 TGCCAGTGTGTCGAGCTCCACGGTGGTGACTCCACTGTACAGACCCTGGATCACCTTCAT 31713 Query 70500 GGCTATTTTGATAGGATCTATGAATTCTGTGTTCAGACCATAACATAATTTTCTAATACG 70559 | || | | ||||| | || || | |||||| || || || | || || || Sbjct 31714 CGTAATCTGGGCCGGATCCACAAAGTCAGAGTTCAGGCCGTAGCACAGCTTCTGGATGCG 31773 Query 70560 AGATGTAATTTTATCAAACATAAC 70583 ||| || |||||||| ||||| || Sbjct 31774 AGAGGTGATTTTATCGAACATGAC 31797 >seq49 Length=318415 Score = 120 bits (132), Expect = 4e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 ||||||| || ||||| | ||||| || | || || ||||||||||| || | ||| | Sbjct 81303 CCTCATCCCTGCTAATCAGCTCGTTGGAGTAGGTAAGGCCAGGCATTAGTCCTCTCTTCT 81362 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 |||||||| | |||||||| || || || || ||||||||||| || ||||||||||| | Sbjct 81363 TGAGCCAATAGATGGCAGCGAATGAGCCGGAGAAGAAGATGCCCTCCACTGCTGCAAAAG 81422 Query 39759 CAACAAGTCTCTCTCC 39774 | ||||||| ||| || Sbjct 81423 CCACAAGTCGCTCCCC 81438 >seq1161 Length=118247 Score = 102 bits (112), Expect = 1e-16 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 69325 ATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTG 69384 ||||| || || ||||| || ||||||| || |||||||| ||||| || ||||| || Sbjct 53932 ATCTCCGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTG 53873 Query 69385 TTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATA 69444 || |||||||||||||| || || | || ||||| ||||| ||||||| || || ||| Sbjct 53872 TTGCAGGCGTCCTTGTAGAGCATGTATGGCGTACCGGTTTCTGTCTGAGACTCAATTATA 53813 Query 69445 G 69445 | Sbjct 53812 G 53812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686752545420720