Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maccullochella_20peelii_20[genbank_20GCA_5F002120245.1_202017-05-09] 18,198 sequences; 633,241,041 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1183 105 5e-18 seq1187 96.9 3e-15 >seq1183 Length=103181 Score = 105 bits (116), Expect = 5e-18 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 77311 CCAGACAACCTCCAGCTCCAAATTGAGTTGGTCCAGCTTCATAAAGTCATCCTTGTTGAC 77370 |||||| ||||||||||| ||| ||| ||||||||||| |||||| || |||||| Sbjct 34786 CCAGACCACCTCCAGCTCTGCATTCAGTCTGTCCAGCTTCACAAAGTCGTCTTTGTTGGT 34845 Query 77371 AACTGACCCTCCGCCATGCAGCCTCCAGCCGTTCTGCTTCCAGTTCTTAACCCACTTAGT 77430 | | ||||| | |||||||||||||||| ||||||||||||| ||||| | || Sbjct 34846 GATCGGACCTCCAGATTTCAGCCTCCAGCCGTTCAGCTTCCAGTTCTTCACCCAGCTGGT 34905 Query 77431 CACACC 77436 |||||| Sbjct 34906 CACACC 34911 Score = 96.9 bits (106), Expect = 3e-15 Identities = 77/93 (83%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 77862 CTTCTCTGACAAACGCCCAGGCATCTTGCTCTGTTGCAAACTTCTTAAATACGGCTGCTG 77921 || |||||| |||||||||||||||| ||||| |||||||||||| || ||| | || Sbjct 36570 CTCCTCTGAAAAACGCCCAGGCATCTCTCTCTGATGCAAACTTCTTGAAAGAGGCGGATG 36629 Query 77922 GGAATTTGTCTACTTGGCTCTTACATTCATCCC 77954 | ||||| || || |||||||| |||||||||| Sbjct 36630 GAAATTTCTCCACCTGGCTCTTGCATTCATCCC 36662 >seq1187 Length=147014 Score = 96.9 bits (106), Expect = 3e-15 Identities = 92/118 (78%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 87328 CCTGCTCCCAGTTTACTAAAATCTTTCTTAGATTGAAATGTATAGACTGTCAAGCCAGCA 87387 |||||||||| ||| || || || | || || || || || ||| |||||| |||||| Sbjct 125974 CCTGCTCCCATTTTGCTGAAGTCCCTTTTGGACTGGAAGGTGTAGGCTGTCAGTCCAGCA 126033 Query 87388 AACACAGCACATGTTaaaaaaaGCGATTGTAGTATGGTGGAGTATTCATAGAAGGTCA 87445 ||||||||||| || | || | | ||| |||| |||||||||||||||||||||| Sbjct 126034 AACACAGCACAGGTCAGGAACAAGGCTTGCAGTACAGTGGAGTATTCATAGAAGGTCA 126091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397367848978990