Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maccullochella_20peelii_20[genbank_20GCA_5F002120245.1_202017-05-09] 18,198 sequences; 633,241,041 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq4239 223 4e-53 seq1161 89.7 6e-13 >seq4239 Length=33969 Score = 223 bits (246), Expect = 4e-53 Identities = 961/1499 (64%), Gaps = 58/1499 (4%) Strand=Plus/Plus Query 110614 CTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGCTTGTTGAC 110673 |||||| |||| | ||| || || ||| | | ||||| |||| || || || || Sbjct 29866 CTTCATCTCCTCGCTCCACAGCCCCCTCTCCGTCAGGTCTTTGAGCAGATGTGGATTCAC 29925 Query 110674 AATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAA 110733 || |||||| || | |||| || | ||||||||| | ||||| | ||||| Sbjct 29926 GATCTGAAACTCTCCAGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAAGCTTCAAT 29985 Query 110734 GCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAG 110793 | ||||| || |||| ||| || |||||||||||||| ||||| || |||| || || Sbjct 29986 AGACTCATTGTTGCCCAGGATCTGGGCGGTGGAGGCTGTGGGCATCGGGGCCAGCAGCAG 30045 Query 110794 ACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTC--GTAGTTG 110851 |||||| | | || | || || ||||| || | | |||||| | || | Sbjct 30046 ACTGTTCCTCACGCCGTGCTTGGCAATCTTCTCCTTCAGCAGCTTCCAGTCCAGCAGGTC 30105 Query 110852 AGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCC 110911 | | ||| || || |||||||||| |||| || | || | | ||||||| || Sbjct 30106 GG-TGGGTGTCTTCT-CCCACATGTCGTACTGGAGGATGCCGTTGCTGACGGGAGAGCCT 30163 Query 110912 TCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCG 110971 || | || ||||||| || | | | |||| || ||||| |||||||||| ||| Sbjct 30164 TCGTACGTCTCATAGGGGCCAAGCTCAGCCGCCAGCTCGCAGCTTGCCTCCAGGGCGGCG 30223 Query 110972 TGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCG 111031 | || ||||| |||||||| || |||| | || || || || || | | Sbjct 30224 TAGTAGATGGTCTCAAAGATCTGAATGTTCAGCAGCTGAGCCTCGGGGCTTTCGAACGGG 30283 Query 111032 TAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGT 111091 || || | || || |||| || | ||| || ||||| | || || || ||||| Sbjct 30284 TAACGCATGAGGATGAAGGCATCGGCCAAACCCTGGACACCGATTCCTATTGGCCTGTGA 30343 Query 111092 CGCATATTAGACTTTCGCGCAGTCTCA---ACGGGATAAAAATTTCTGTCAATGACTCGG 111148 ||| | || |||||| || ||| || ||||| || || | ||||| | | Sbjct 30344 CGCTTGTTGGACTTTTCTGCT---TCAGGCACTGGATAGAAGTTAATCTCAATTATCTTG 30400 Query 111149 TTTAGATTTTTGGTAACAATCTTTGTGATTTCATGA---AGTTTTTCATAATCAAAAGTG 111205 |||| |||||| || || | || | ||| ||||| | | | |||||||| Sbjct 30401 TTTAAGTTTTTG---ACTATTACTTTGGTCACATACGCTAGTTTCTTAAAGTCAAAAGTC 30457 Query 111206 CGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTC 111265 | ||| |||| ||| | || || || || |||| ||| || |||||| | Sbjct 30458 TG---CTCAGGGGTGACGTACATGTTGAGTGCAATGGAGGCCAGATTACAGACAGCCACC 30514 Query 111266 TCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCC 111325 ||||| | ||||| || | |||||||| || | |||| ||||| || || || Sbjct 30515 TCATCGTGGCTGGTGTATTCAATGATTTCTGTGCAGAGGTTGCTGCTCTTGATGGTGCCT 30574 Query 111326 AAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCC 111385 | ||||| ||||| |||||| |||||||||| |||||||| |||||||| ||||| || Sbjct 30575 AGATTCTGCTGGTTGCTCTTCCTGTTGCACGCGTCCTTGTACAGCATGTATGGCGTACCG 30634 Query 111386 GTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAACAT-CGGCGGCTGGTACAATGGCGTT 111444 || || ||||| || | || ||| || | ||| | | | | | || ||| || || Sbjct 30635 GTTTCTGTCTGGGACTCGATAATGGCGTGCCACAGCTGCTGAGCCTTCACCAAGCGC-TT 30693 Query 111445 GGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC-GT 111503 | ||| |||||| ||| || | || ||||| ||||||||||| ||| | || | Sbjct 30694 GACCCTCCCCTCCTTCTCATATGTGGTATAGAGCTTCTCAAACTCCTC-CCCCCAGCACT 30752 Query 111504 CGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCA---TTGACCACCTTCCTCAA 111560 || || || || || |||||| | |||||||| ||| | |||| | Sbjct 30753 CGTCCAGCCCCGGGCACTCACTTGGACACATCAGAGACCAGTCTTGGTTGCTTTCC---A 30809 Query 111561 CCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCT 111620 | | ||||||||| ||||| || ||||||| || | || |||||||| | || Sbjct 30810 CTCTCTTCATGAACAGGTCGGGGATCCACATGGCGTAGAAAAGATCTCTGGCTCTCTGCT 30869 Query 111621 CTTCGTCACCTTGGTTGAGTCGT-AACTCAAGGAACTCCATGATATCCGCGTGCCATGGC 111679 | || | ||| ||| || | | ||| ||||| || | | ||| |||||| ||| Sbjct 30870 CCTCCTTTCCTGTGTT-CTTCTTCAGCTCCAGGAAGTCAAACACATCAAAGTGCCAGGGC 30928 Query 111680 TCAAGATAGACTGCGATAGATC----CCTTTCGACGCCCAGCTTGATTTACATAGCGCGC 111735 || || || | || | | || ||| | | | ||| | || | ||||| || || Sbjct 30929 TCCAGGTACATGGCAAAGGCTCCGGGCCTCTTGTTG-CCACCCTGGTCGACATAACGTGC 30987 Query 111736 TGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCG 111795 |||| |||| | || | ||||| || | | |||| || | || ||||| || Sbjct 30988 TGTGTTGTTATAAACTCTCAGCATGGGGACTAGCCCATTGGAGTTGCCGTTTGTGCC--- 31044 Query 111796 AATACGAGATTTATTGGCTC-----TCACATCATGGATGTG-----CATCCCAATACCCC 111845 | ||| || |||| | | | ||| | || || || || || | Sbjct 31045 ----AGCGATGTA---GCTCCCCGTTGATCTGATGCAGCTGACCGCCACGCCGATTCCTC 31097 Query 111846 CAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGT 111905 |||| ||| ||||| | ||||| | | | || || |||| || || | ||| || Sbjct 31098 CAGCTGCCTTGGAGATGAGGGCACATTGCTTCAGCGTGTCATAAATGCCTTCGATGCTGT 31157 Query 111906 CCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGA 111965 | || || |||||| |||||||| ||||||| ||| || || || || || |||| Sbjct 31158 CGTCTTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCCTGTTGGTTCCTGCGTTGA 31217 Query 111966 AGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCGTATGTCTCCAAG 112024 |||| || || | ||||| ||||| || | | |||| | || ||| ||||| | | Sbjct 31218 AGAGCGTAGGGGAGGCGTGGGTGAAC-CACTTCTCTGACAACAGGTTGTAGGTCTCGATG 31276 Query 112025 ACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGG 112083 | | || || || |||||| || | || || | ||||| ||||| ||| || Sbjct 31277 GCTGCGTCGATATCCGTTTTGTGGATCCCAACAGCCACTCTCATGAGCATGTGCTGCGG 31335 >seq1161 Length=118247 Score = 89.7 bits (98), Expect = 6e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 111277 TGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTG 111336 ||||||||||| || || || || | ||| || || || |||| ||||| || Sbjct 53945 TGTGTACTCTACGATCTCCGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTG 53886 Query 111337 GTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTG 111396 ||| |||||| ||||||| || ||||||||||||||||| ||||| || || || ||||| Sbjct 53885 GTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGCGTACCGGTTTCTGTCTG 53826 Query 111397 TGATTTGAGAATAGCCTTCCAAAC 111420 || | | ||||| | ||| || Sbjct 53825 AGACTCAATTATAGCGTACCACAC 53802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627889138420800