Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maccullochella_20peelii_20[genbank_20GCA_5F002120245.1_202017-05-09] 18,198 sequences; 633,241,041 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq4239 203 4e-47 seq1161 95.1 1e-14 seq7404 93.3 5e-14 >seq4239 Length=33969 Score = 203 bits (224), Expect = 4e-47 Identities = 866/1344 (64%), Gaps = 62/1344 (5%) Strand=Plus/Plus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 ||||| ||| | ||||| | |||| |||||||||| |||| ||| ||||| |||||| Sbjct 29960 TAGATGTTGCTGGTGTAAGCTTCAATAGACTCATTGTTGCCCAGGATCTGGGCGGTGGAG 30019 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCC 118301 ||||||||||| || |||| || || ||||| | | || | | ||| ||| Sbjct 30020 GCTGTGGGCATCGGGGCCAGCAGCAGACTGTTCCTCACGCCGTGCTTGGCAATCTTCTCC 30079 Query 118302 TTGAG-AGCGTCCCAGTC------GTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAA 118354 || || ||| ||| |||| || | || | ||||| | || ||||| || | Sbjct 30080 TTCAGCAGCTTCC-AGTCCAGCAGGTCGGTGGG---TGTCTTCTCC---CACATGTCGTA 30132 Query 118355 CTGGAGGATACCTTGG--GACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACC 118412 ||||||||| || | | |||| || || || || | |||||||| ||||| || | Sbjct 30133 CTGGAGGATGCCGTTGCTGACG--GGAGAGCCTTCGTACGTCTCATAGGGGCC---AAGC 30187 Query 118413 TC---CGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGA 118469 || ||||| ||| |||| ||||| ||||| |||| || || || ||||| || || Sbjct 30188 TCAGCCGCCAGCTCGCAGCTTGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATCTGA 30247 Query 118470 GCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCC 118529 |||| || |||||| | || |||| | || | || || |||| Sbjct 30248 ATGTTCAGCAGCTGAGCCTCGGGGCTTTCGAACGGGTAACGCATGAGGATGAAGGCATCG 30307 Query 118530 GCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTC 118589 || | ||| |||||||||| || ||||| | || | | | || ||||| || Sbjct 30308 GCCAAACCCTGGACACCGATTCCTATTGGCCTGTGACGCTTGTTGGACTTTTCTGCTTCA 30367 Query 118590 TCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTG 118649 ||| ||||| || || | || || | | | |||| |||||| | || || || Sbjct 30368 GGCACTGGATAGAAGTTAATCTCAATTATCTTGTTTAAGTTTTTGACTATTACTTTGGTC 30427 Query 118650 ATTTCATGAAGCT--TTTCGTAA--TCAAAACTGCGAGTCTCTTCAT---TGACATACTT 118702 | ||| | ||| |||| ||| |||||| |||| ||| |||| ||| | Sbjct 30428 A---CAT-ACGCTAGTTTCTTAAAGTCAAAA------GTCTGCTCAGGGGTGACGTACAT 30477 Query 118703 AGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTAT 118762 || || || || ||||||||||| |||| |||||| | ||||| || || Sbjct 30478 GTTGAGTGCAATGGAGGCCAGATTACAGACAGCCACCTCATCGTGGCTGGTGTATTCAAT 30537 Query 118763 AATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGT 118822 ||||| ||||| | ||| ||||| |||||||| | |||| || || ||| | Sbjct 30538 GATTTCTGTGCAGAGGTTGCTGCTCTTGATGGTGCCTAGATTCTGCTGGTTGCTCTTCCT 30597 Query 118823 GTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAAT 118882 ||| ||||| |||||||| |||||||||||||| || || || || ||||||| || ||| Sbjct 30598 GTTGCACGCGTCCTTGTACAGCATGTATGGCGTACCGGTTTCTGTCTGGGACTCGATAAT 30657 Query 118883 AGCCTTCCAGACATCGGC--AGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTAC 118940 || | || ||| | || ||| ||| | ||| | | |||||| | ||| || Sbjct 30658 GGCGTGCC--ACAGCTGCTGAGCCTTCACCAAGCGCTTGACCCTCCCCTCCTTCTCATAT 30715 Query 118941 TTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCT 119000 | || ||||| |||||||| || ||| | ||| ||||| || || | | Sbjct 30716 GTGGTATAGAGCTTCTCAAACTCCTCCCCCCAGCACTCGTCCAGCCCCGGGCACTCACTT 30775 Query 119001 GGGCAGAAGAGAGACCA---TTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGG 119057 || || | |||||||| ||| | ||| || | ||||||||| ||||| ||| Sbjct 30776 GGACACATCAGAGACCAGTCTTGGTTGCTTTCC---ACTCTCTTCATGAACAGGTCGGGG 30832 Query 119058 ATCCAGAGCGCCGAGAAGAGATC-CCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACG 119116 ||||| | || |||| ||||| | | | ||| || | | || || || Sbjct 30833 ATCCACATGGCGTAGAAAAGATCTCTGGCTCTCTGCTCCTCCTTTCCTGTG-TTCTTCTT 30891 Query 119117 CAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACC- 119175 || ||||| ||||| | | ||| |||||| || |||||||||| || | | | Sbjct 30892 CAGCTCCAGGAAGTCAAACACATCAAAGTGCCAGGGCTCCAGGTACATGGCAAAGGCTCC 30951 Query 119176 ---CCTTACGACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCA 119232 ||| | | ||| |||||| ||||| | || ||| |||| | || | |||| Sbjct 30952 GGGCCTCTTGTTG-CCACCCTGGTCGACATAACGTGCTGTGTTGTTATAAACTCTCAGCA 31010 Query 119233 TTGGAATGATACCATCGGATTGGCCATTTGT-CCCCCGAATACGAGACTTATTGGCTCTG 119291 | || | | |||| ||| | ||| ||||| || ||| | | || | |||| Sbjct 31011 TGGGGACTAGCCCATTGGAGTTGCCGTTTGTGCCAGCGATGTAGCTCCCCGTT-GATCTG 31069 Query 119292 ACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTG 119351 | | || || || || || || || ||| ||||| | || || | | | Sbjct 31070 ATGCAGCTGACCGCCACGCCGATTCCTCCAGCTGCCTTGGAGATGAGGGCACATTGCTTC 31129 Query 119352 AGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGAC 119411 || || | || || || ||||| ||| | || | |||| ||||||||||| ||| Sbjct 31130 AGCGTGTCATAAATGCCTTCGATGCTGTCGTCTTTCATGGCGAGCAGGAAGCAGCTGGAC 31189 Query 119412 ATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCT 119471 | || |||||| || || ||||||||||| || || | |||||| ||||| || | Sbjct 31190 AGCTGTGGCCTGTTGGTTCCTGCGTTGAAGAGCGTAGGGGAGGCGTGGGTGAAC-CACTT 31248 Query 119472 -TGGGACATCTTGTCGTAGGTCTC 119494 | |||| | || ||||||||| Sbjct 31249 CTCTGACAACAGGTTGTAGGTCTC 31272 >seq1161 Length=118247 Score = 95.1 bits (104), Expect = 1e-14 Identities = 76/92 (83%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 ||||| ||| | ||||| | ||||| | |||||||||| |||| ||| ||||| ||||| Sbjct 54906 TAGATGTTGCTGGTGTAGGCCTCAATGGACTCATTGTTGCCCAGGATCTGGGCAGTGGAA 54847 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 118273 |||||||||||||| |||| ||| || ||||| Sbjct 54846 GCTGTGGGCATGGGGGCCAAGAGCAGACTGTT 54815 >seq7404 Length=21843 Score = 93.3 bits (102), Expect = 5e-14 Identities = 86/109 (79%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 130035 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 130094 ||||||| | | |||||| || || |||||| ||| || ||||| || || | ||||| Sbjct 16232 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 16173 Query 130095 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143 ||| |||||| |||||| || || |||||||||||||| |||||||| Sbjct 16172 TCAGCCAGAAGATCGCAGCGAAGGAACCAGAGAAGAAGATTCCCTCCAC 16124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618294521452880