Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maccullochella_20peelii_20[genbank_20GCA_5F002120245.1_202017-05-09] 18,198 sequences; 633,241,041 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq4239 208 9e-49 seq7404 89.7 6e-13 seq49 89.7 6e-13 seq1161 84.2 3e-11 >seq4239 Length=33969 Score = 208 bits (230), Expect = 9e-49 Identities = 909/1413 (64%), Gaps = 70/1413 (5%) Strand=Plus/Minus Query 104314 GTTCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAG 104373 ||||| ||||| | || || |||||||| || || || || || || ||||||| Sbjct 31243 GTTCACCCACGCCTCCCCTACGCTCTTCAACGCAGGAACCAACAGGCCACAGCTGTCCAG 31184 Query 104374 TTGCTTCCTTATCGCCAACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGA 104433 |||||||| |||||| || || ||| ||| | || || |||| || || | | | Sbjct 31183 CTGCTTCCTGCTCGCCATGAAAGACGACAGCATCGAAGGCATTTATGACACGCTGAAGCA 31124 Query 104434 GTGTGCGCAAATCTCAAAGTGGGCTGGGGGTATTGGGATG-----CACATCCATGATGTG 104488 ||||| | ||||| ||| ||||| || || || || || | ||| | | Sbjct 31123 ATGTGCCCTCATCTCCAAGGCAGCTGGAGGAATCGGCGTGGCGGTCAGCTGCATCAGATC 31064 Query 104489 A-----GAGCCAATAAATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGTATTATTC 104543 | |||| || ||| | || ||||| || | || |||| | | | Sbjct 31063 AACGGGGAGC---TACATCGCT-------GGCACAAACGGCAACTCCAATGGGCTAGTCC 31014 Query 104544 CAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAAGCTGGGCGTCGAAAGG 104603 | ||||| | || | |||| |||||| || ||||| | || | ||| | | | ||| Sbjct 31013 CCATGCTGAGAGTTTATAACAACACAGCACGTTATGTCGACCAGGGTGG-CAACAAGAGG 30955 Query 104604 ----GATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAG 104659 || | | || | || || ||||| |||||| ||| | | || ||||| ||| Sbjct 30954 CCCGGAGCCTTTGCCATGTACCTGGAGCCCTGGCACTTTGATGTGTTTGACTTCCTGGAG 30895 Query 104660 TTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGG 104719 || ||| ||| | |||||| | | | | ||||| |||| ||| | ||| Sbjct 30894 CTGAAGAAGAACACAGGAAAGGAGGAGCAGAGAGCCAGAGATCTTTTCTACGCCATGTGG 30835 Query 104720 ATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAAT---TGGTCTCTCTTTTGT 104776 || || || || |||||||||||||| ||| || | | |||||||| | ||| Sbjct 30834 ATCCCCGACCTGTTCATGAAGAGAGT---GGAAAGCAACCAAGACTGGTCTCTGATGTGT 30778 Query 104777 CCAGACAAGGCACCTGGTCTCTCCGA-TGCCGTGGGTGAGGAGTTTGA--AGCCCTTTAC 104833 ||| || || || || ||| ||| | ||| ||||||||||| ||| || ||| Sbjct 30777 CCAAGTGAGTGCCCGGGGCTGGACGAGTGCTGGGGG-GAGGAGTTTGAGAAGCTCTATAC 30719 Query 104834 -ACAAAGTACGAGGAAG--AAGGTCGGGCGACTGC-GACGGTGCCAGCTGCCGATGTGTG 104889 ||| | | |||| | | |||| ||| || || || | ||| || |||| Sbjct 30718 CACATATGAGAAGGAGGGGAGGGTCAAGCGCTTGGTGAAGGCTC-AGCAGC-----TGTG 30665 Query 104890 GAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGC 104949 | | || ||| || |||| || || || || ||||| ||||||||||| ||||| ||||| Sbjct 30664 GCACGCCATTATCGAGTCCCAGACAGAAACCGGTACGCCATACATGCTGTACAAGGACGC 30605 Query 104950 CTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTAC 105009 || ||| ||||| || || ||||| | || |||||||| ||| ||||| || Sbjct 30604 GTGCAACAGGAAGAGCAACCAGCAGAATCTAGGCACCATCAAGAGCAGCAACCTCTGCAC 30545 Query 105010 AGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGC 105069 ||||||| | |||| || | | |||||| |||||| ||||| || || || || || Sbjct 30544 AGAAATCATTGAATACACCAGCCACGATGAGGTGGCTGTCTGTAATCTGGCCTCCATTGC 30485 Query 105070 TCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGT 105129 ||| || ||| || || ||| |||| ||||| | | | ||||| | || Sbjct 30484 ACTCAACATGTACGTCACCCCTGAG---CAGACTTTTGACTTTAAGAAACTAGCGTATGT 30428 Query 105130 TACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGT--- 105186 || ||| | ||||||| |||||| | ||||| | || || || || || Sbjct 30427 GACCAAAGTAATAGTCAAAAACTTAAACAAGATAATTGAGATTAACTTCTATCCAGTGCC 30368 Query 105187 TGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCT 105246 ||| || || || || | | | ||| | ||||| || ||||||| |||||| | Sbjct 30367 TGA---AGCAGAAAAGTCCAACAAGCGTCACAGGCCAATAGGAATCGGTGTCCAGGGTTT 30311 Query 105247 CGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAA 105306 || |||| ||||| || || || | || || | ||| || || | || Sbjct 30310 GGCCGATGCCTTCATCCTCATGCGTTACCCGTTCGAAAGCCCCGAGGCTCAGCTGCTGAA 30251 Query 105307 TGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGGCGAGTTCAGAGTTGGCAGA 105366 | || ||||||||||| || ||||||| || ||||| || | ||| |||| Sbjct 30250 CATTCAGATCTTTGAGACCATCTACTACGCCGCCCTGGAGGCAAGCTGCGAGCTGGC--- 30194 Query 105367 GGTTGA---TGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCA-CAA-GGGGTGCTT 105421 || ||| ||| || ||||| || | || || ||||| | ||| ||| || | || Sbjct 30193 GGCTGAGCTTGGCCCCTATGAGACGTACGAAGGCTCTCC--CGTCAGCAACGGCATCCTC 30136 Query 105422 CAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTAC--GACTGGGAAGCT-CTCAAG 105478 || | || ||||||| || || ||| | | | || | |||| ||||||| || ||| Sbjct 30135 CAGTACGACATGTGGG-AGAAGACACCCACCGAC-CTGCTGGACT-GGAAGCTGCTGAAG 30079 Query 105479 GAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCC 105538 || || || | || | | |||||||| || |||| || ||||| |||||| Sbjct 30078 GAGAAGATTGCCAAGCACGGCGTGAGGAACAGTCTGCTGCTGGCCCCGATGCCCACAGCC 30019 Query 105539 TCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTAT 105598 |||||||| || ||| |||| || ||||| | ||||| | ||||| | |||||||| Sbjct 30018 TCCACCGCCCAGATCCTGGGCAACAATGAGTCTATTGAAGCTTACACCAGCAACATCTAC 29959 Query 105599 CTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCATCTCGTGGATGACCTC 105658 | || |||| | ||||||||| ||| || || ||||| | | ||||| Sbjct 29958 ACCCGCAGGGTCCTCTCTGGAGAGTTTCAGATCGTGAATCCACATCTGCTCAAAGACCTG 29899 Query 105659 AAAGAGATTGGTCTCTGGTCCAAGGATATGAAG 105691 | |||| || || ||| | |||| |||||| Sbjct 29898 ACGGAGAGGGGGCTGTGGAGCGAGGAGATGAAG 29866 >seq7404 Length=21843 Score = 89.7 bits (98), Expect = 6e-13 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 94828 GTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGT 94887 || ||||| ||||||||||||||||||||| || || | ||||| |||||| |||| Sbjct 16124 GTGGAGGGAATCTTCTTCTCTGGTTCCTTCGCTGCGATCTTCTGGCTGAAGAAGAGAGGC 16183 Query 94888 CTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGG 94936 || ||||| || || ||||||||||||||| ||| | ||||||| Sbjct 16184 CTGATGCCCGGCCTGACCTTCTCCAACGAGCTCATCAGCAGAGACGAGG 16232 >seq49 Length=318415 Score = 89.7 bits (98), Expect = 6e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 94804 GAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCT 94863 |||||||| | || ||||| || ||||| ||||||||||| || || ||| || Sbjct 81435 GAGCGACTTGTGGCTTTTGCAGCAGTGGAGGGCATCTTCTTCTCCGGCTCATTCGCTGCC 81376 Query 94864 ATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTAT 94922 || ||||||||||||||| |||| || ||||| || || || |||||||||||| || Sbjct 81375 ATCTATTGGCTCAAGAAGAGAGGACTAATGCCTGGCCTTACCTACTCCAACGAGCTGAT 81317 >seq1161 Length=118247 Score = 84.2 bits (92), Expect = 3e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 104885 GTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAA 104944 |||||| | ||||| | ||||||| || || || ||||| ||||||||||| ||||| Sbjct 53802 GTGTGGTACGCTATAATTGAGTCTCAGACAGAAACCGGTACGCCATACATGCTCTACAAG 53861 Query 104945 GACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTC 105004 |||||||| ||| ||||| || || ||||| |||| ||||| |||||| Sbjct 53862 GACGCCTGCAACAGGAAGAGCAACCAGCAGAATCTGGGCACCATCAAATCCAGCAATCTG 53921 Query 105005 TGTACAGAAATCTTGGAATTTACAGACAAAGATGAG 105040 || || || ||| | || | ||| |||||| ||| Sbjct 53922 TGCACGGAGATCGTAGAGTACACAAGCAAAGACGAG 53957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583128122749520