Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maccullochella_20peelii_20[genbank_20GCA_5F002120245.1_202017-05-09] 18,198 sequences; 633,241,041 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq4239 241 1e-58 seq7404 104 3e-17 seq1161 96.9 4e-15 seq49 96.9 4e-15 >seq4239 Length=33969 Score = 241 bits (266), Expect = 1e-58 Identities = 531/790 (67%), Gaps = 16/790 (2%) Strand=Plus/Plus Query 79057 GATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCAC 79116 || ||||| || || || ||| ||| || |||| | || |||||||||||||| Sbjct 30491 GAGGCCAGATTACAGACAGCCACCTCATCGTGGCTGGTGTATTCAATGATTTCTGTGCAG 30550 Query 79117 AAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCC 79176 | || |||||||||||| | |||| ||||||||||||| ||| || |||||| Sbjct 30551 AGGTTGCTGCTCTTGATGGTGCCTAGATTCTGCTGGTTGCTCTTCCTGTTGCACGCGTCC 30610 Query 79177 TTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGTCCCAGATG 79236 ||||| |||||| ||||| ||||| || ||| || || || | ||| ||| | Sbjct 30611 TTGTACAGCATGTATGGCGTACCGGTTTCTGTCTGGGACTCGATAATGGCGTGCCACAGC 30670 Query 79237 TCCCGGGCCCGGACAACCTTCTTGTACCGACCCTGTGCGACGTACGTCCGGTACAACTCG 79296 | | | ||| || | |||| || |||| | || || || | || Sbjct 30671 TGCTGAGCCTTCACCAAGCGCTTGACCCTCCCCTCCTTCTCATATGTGGTATAGAGCTTC 30730 Query 79297 TTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAGGTGC 79356 | || ||||||| || ||| ||| ||||||||||| || |||||||| | Sbjct 30731 TCAAACTCCTCCCCCCAGCACTCGTCCAGCCCCGGGCACTCACTTGGACACATCAGAGAC 30790 Query 79357 CAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAAG 79416 ||||| | || | || || ||| |||||| ||||| |||||||||| ||| ||| Sbjct 30791 CAGTCTTGGTTGCTTTCCACTCTCTTCATGAACAGGTCGGGGATCCACATGGCGTAGAAA 30850 Query 79417 AGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATG 79476 || || | | | | |||||| | || |||| |||||| || ||||| | Sbjct 30851 AGATCTCTGGCTCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAGTCAAAC 30910 Query 79477 ATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCC 79536 | || |||||| |||||||| || ||||| || | || | |||| ||| ||| Sbjct 30911 ACATCAAAGTGCCAGGGCTCCAGGTACATGGCAAAGGCTCCGGGCCTCTTGTTGCCACCC 30970 Query 79537 TGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGGCG 79596 |||| ||| || || || |||||||| |||||| |||||||| || | || | || | Sbjct 30971 TGGTCGACATAACGTGCTGTGTTGTTATAAACTCTCAGCATGGGGACTAGCCCATTGGAG 31030 Query 79597 ACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTC-GA-GCAGTGGATT- 79653 |||||| || || ||| ||| |||| |||| || || || |||| || Sbjct 31031 TTGCCGTTTGTGCCAGCGAT----GTA--GCTC-CCCGT-TGATCTGATGCAGCTGACCG 31082 Query 79654 -----CCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGA 79708 ||||| || || | |||||||||| | || || | ||| ||||| || || | Sbjct 31083 CCACGCCGATTCCTCCAGCTGCCTTGGAGATGAGGGCACATTGCTTCAGCGTGTCATAAA 31142 Query 79709 TGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGT 79768 |||| ||||| |||||| ||||| |||| |||||||||||| |||| |||||| ||| Sbjct 31143 TGCCTTCGATGCTGTCGTCTTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCCTGT 31202 Query 79769 TCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCAGAT 79828 | || || ||||||||||| || || | ||||| ||||| |||| | || ||| | Sbjct 31203 TGGTTCCTGCGTTGAAGAGCGTAGGGGAGGCGTGGGTGAACCACTTCTCTGACAACAGGT 31262 Query 79829 CGTACGTCTC 79838 ||| ||||| Sbjct 31263 TGTAGGTCTC 31272 >seq7404 Length=21843 Score = 104 bits (114), Expect = 3e-17 Identities = 89/110 (81%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 60002 CGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGG 60061 |||||| ||||||||||||||||| || ||| ||| || |||||||| || ||| | || Sbjct 16123 CGTGGAGGGAATCTTCTTCTCTGGTTCCTTCGCTGCGATCTTCTGGCTGAAGAAGAGAGG 16182 Query 60062 CCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGG 60111 ||| ||||| ||||||| |||||||||||||| || | | ||||||| Sbjct 16183 CCTGATGCCCGGCCTGACCTTCTCCAACGAGCTCATCAGCAGAGACGAGG 16232 >seq1161 Length=118247 Score = 96.9 bits (106), Expect = 4e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 79098 CTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCT 79157 ||| | ||| || ||||||| ||| || ||||||||||| | |||| ||||||||| Sbjct 53939 CTCTACGATCTCCGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGGTTGCT 53880 Query 79158 CTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTC 79205 |||| ||| ||||||||||||||| |||||| ||||| ||||| || Sbjct 53879 CTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGCGTACCGGTTTC 53832 >seq49 Length=318415 Score = 96.9 bits (106), Expect = 4e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 59991 GCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTC 60050 ||||||||| ||||| || ||||||||||| ||||| ||| ||| || | |||||| Sbjct 81423 GCTTTTGCAGCAGTGGAGGGCATCTTCTTCTCCGGCTCATTCGCTGCCATCTATTGGCTC 81364 Query 60051 AAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAG 60110 || ||| | || || ||||| ||||| | | |||||||||||||||| | |||| ||| Sbjct 81363 AAGAAGAGAGGACTAATGCCTGGCCTTACCTACTCCAACGAGCTGATTAGCAGGGATGAG 81304 Query 60111 G 60111 | Sbjct 81303 G 81303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548400024321120