Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Maccullochella_20peelii_20[genbank_20GCA_5F002120245.1_202017-05-09] 18,198 sequences; 633,241,041 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq4239 150 2e-31 seq954 95.1 1e-14 seq49 87.8 2e-12 seq2764 86.0 7e-12 >seq4239 Length=33969 Score = 150 bits (166), Expect = 2e-31 Identities = 454/692 (66%), Gaps = 12/692 (2%) Strand=Plus/Minus Query 53267 AAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATG 53326 |||| || || |||||| | || || || |||||||| || || || || ||| || Sbjct 31248 AAGTGGTTCACCCACGCCTCCCCTACGCTCTTCAACGCAGGAACCAACAGGCCACAGCTG 31189 Query 53327 TCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTC 53386 || |||||||||||| | || ||||| || ||| ||||| ||||| || || ||||| Sbjct 31188 TCCAGCTGCTTCCTGCTCGCCATGAAAGACGACAGCATCGAAGGCATTTATGACACGCTG 31129 Query 53387 AAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTAT---CCACTGCTCGAAC 53443 ||| | ||||||| |||||||||| | || || ||||| | | ||| | Sbjct 31128 AAGCAATGTGCCCTCATCTCCAAGGCAGCTGGAGGAATCGGCGTGGCGGTCAGCT---GC 31072 Query 53444 GTCCGTGCGAACGGCACACCA-ATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCC 53502 || | | ||||| | | ||| || || |||||| | || |||| | || || Sbjct 31071 ATCAGATC-AACGGGGAGCTACATCGCTGGCACAAACGGCAACTCCAATGGGCTAGTCCC 31013 Query 53503 TATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAA 53562 ||||| | || | |||||||| || || || ||| |||||||||| ||| | Sbjct 31012 CATGCTGAGAGTTTATAACAACACAGCACGTTATGTCGACCAGGGTGGCAACAAGAGGCC 30953 Query 53563 GGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCT 53622 || | || ||||| ||||| ||||| |||||| || | | || || || ||||| Sbjct 30952 CGGAGCCTTTGCCATGTACCTGGAGCCCTGGCACTTTGATGTGTTTGACTTCCTGGAGCT 30893 Query 53623 GCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT-TACAGCTCTGTGGA 53681 | ||| || | || ||| | | | | || || || ||| || |||||| Sbjct 30892 GAAGAAGAACACAGGAAAGGAGGAGCAGAGAGCCAGAGATCTTTTCTAC-GCCATGTGGA 30834 Query 53682 TTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGA 53741 | || ||||| |||||| | | ||||| | || | || |||| |||||||| || | Sbjct 30833 TCCCCGACCTGTTCATGAAGAGAGTGGAAAGCAACCAAGACTGGTCTCTGATGTGTCCAA 30774 Query 53742 ACGAGTGCCCCGGCCTCCA-GGGTGTCTACGGTGAGGAGTTTAACGAGATGTATCGGACG 53800 |||||||| || || | | ||| || || ||||||||| | || | ||| || Sbjct 30773 GTGAGTGCCCGGGGCTGGACGAGTG-CTGGGGGGAGGAGTTTGAGAAGCTCTATACCACA 30715 Query 53801 TACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAATC 53860 || | |||| | |||| ||| ||||| | || | ||| | || || Sbjct 30714 TATGAGAAGGAGGGGAGGGTCAAGCGCTTGGTGAAGGCTCAGCAGCTGTGGCACGCCATT 30655 Query 53861 CTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCGGTCAACGAG 53920 || || |||| || || || ||||| |||||| |||||||| || |||| | Sbjct 30654 ATCGAGTCCCAGACAGAAACCGGTACGCCATACATGCTGTACAAGGACGCGTGCAACAGG 30595 Query 53921 AAGAGCAACCAGAAGAACATCGGCGTCATCAA 53952 |||||||||||| |||| | ||| |||||| Sbjct 30594 AAGAGCAACCAGCAGAATCTAGGCACCATCAA 30563 >seq954 Length=418004 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| |||||||||| ||| |||||||| ||||| ||| | || ||||| || || Sbjct 297933 GTGAAGATGTAACGAGGGCTGGCAGCATCTTTGCCTCCATTGATGCGAGTACCAAACTGA 297992 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || |||| || || ||||| ||||||| |||||||||||| || |||||||| || Sbjct 297993 CCCAGTGGCTGCAGGATGTTCACGTTGTTGCTGCCCACAAAGTTCTGGGCCAAGTTCACT 298052 Query 117425 ATCGT 117429 || || Sbjct 298053 ATGGT 298057 Score = 82.4 bits (90), Expect = 8e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||||||||| || | |||||| ||||| ||||| || | || || |||||||| Sbjct 297933 GTGAAGATGTAACGAGGGCTGGCAGCATCTTTGCCTCCATTGATGCGAGTACCAAACTGA 297992 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 || |||| |||| ||| | ||||||| |||||| || ||||| ||||| ||||| Sbjct 297993 CCCAGTGGCTGCAGGATGTTCACGTTGTTGCTGCCCACAAAGTTCTGGGCCAAGTTCACT 298052 Query 152149 ATCGT 152153 || || Sbjct 298053 ATGGT 298057 >seq49 Length=318415 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 ||||| ||||| |||| || || || | | |||||||||||| ||||| | |||||| Sbjct 81305 TCATCCCTGCTAATCAGCTCGTTGGAGTAGGTAAGGCCAGGCATTAGTCCTCTCTTCTTG 81364 Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891 | |||| |||||||| ||| || || |||||||||||| || || ||||| || Sbjct 81365 AGCCAATAGATGGCAGCGAATGAGCCGGAGAAGAAGATGCCCTCCACTGCTGCAAAAGCC 81424 Query 74892 ACAAGGCG 74899 ||||| || Sbjct 81425 ACAAGTCG 81432 >seq2764 Length=173314 Score = 86.0 bits (94), Expect = 7e-12 Identities = 96/126 (76%), Gaps = 2/126 (2%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTG- 152087 |||||||||||||| | |||||| | ||||||||||| || || ||||||||||| Sbjct 91332 GTGAAGATGTATCGAGGGCTGGCAGAGTCCTTGCCACCATGCAACCTGGTTCCAAACTGA 91273 Query 152088 TCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCAC 152147 ||||| |||| | ||||| | |||||| |||||||| ||||| |||||| || Sbjct 91272 CCCAGA-GGCTGCAACAGGTTCATATTGTTGCTTCCCACGAAGTTCTGGGCCAAACCAAC 91214 Query 152148 AATCGT 152153 ||| || Sbjct 91213 AATGGT 91208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547091522040400